Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   EGT69_RS07400 Genome accession   NZ_CP078018
Coordinates   1598891..1599244 (+) Length   117 a.a.
NCBI ID   WP_042891052.1    Uniprot ID   -
Organism   Acinetobacter junii strain AJ_351     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1593891..1604244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT69_RS07370 (EGT69_007370) kdsB 1594433..1595194 (+) 762 WP_039047964.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  EGT69_RS07375 (EGT69_007375) - 1595196..1596182 (+) 987 WP_042891020.1 DNA polymerase III subunit delta' -
  EGT69_RS07380 (EGT69_007380) - 1596409..1596753 (+) 345 WP_005402539.1 PilZ domain-containing protein -
  EGT69_RS07385 (EGT69_007385) - 1596776..1597549 (+) 774 WP_039047966.1 TatD family hydrolase -
  EGT69_RS07390 (EGT69_007390) - 1597588..1598196 (+) 609 WP_017397517.1 TetR/AcrR family transcriptional regulator -
  EGT69_RS07395 (EGT69_007395) - 1598209..1598757 (+) 549 WP_042891024.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  EGT69_RS07400 (EGT69_007400) xcpV 1598891..1599244 (+) 354 WP_042891052.1 type II secretion system protein Machinery gene
  EGT69_RS07405 (EGT69_007405) xcpW 1599337..1599969 (+) 633 WP_042891053.1 type II secretion system minor pseudopilin GspJ Machinery gene
  EGT69_RS07410 (EGT69_007410) gspK 1599966..1600925 (+) 960 WP_087539682.1 type II secretion system minor pseudopilin GspK -
  EGT69_RS07415 (EGT69_007415) - 1601032..1601628 (+) 597 WP_004954093.1 6-pyruvoyl trahydropterin synthase family protein -
  EGT69_RS07420 (EGT69_007420) ung 1601667..1602380 (+) 714 WP_004911491.1 uracil-DNA glycosylase -
  EGT69_RS07425 (EGT69_007425) - 1602377..1603501 (+) 1125 WP_171425366.1 enoyl-CoA hydratase/isomerase family protein -
  EGT69_RS07430 (EGT69_007430) tadA 1603508..1604011 (+) 504 WP_087539688.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 117 a.a.        Molecular weight: 12940.97 Da        Isoelectric Point: 9.8535

>NTDB_id=586373 EGT69_RS07400 WP_042891052.1 1598891..1599244(+) (xcpV) [Acinetobacter junii strain AJ_351]
MVALAIFAVAAIALTKIAMQYTQSTSNAILRTKAQFVAMNEIATMEINQEWLEGTQSKQVTAQGVTWQIDKKAQSTLSPK
IQRIELQVSLYNTEQGKVEAGITNLVFFNYPAKVKTS

Nucleotide


Download         Length: 354 bp        

>NTDB_id=586373 EGT69_RS07400 WP_042891052.1 1598891..1599244(+) (xcpV) [Acinetobacter junii strain AJ_351]
ATGGTTGCTTTAGCTATTTTCGCGGTCGCTGCAATCGCGTTAACTAAAATAGCTATGCAGTATACCCAATCAACTTCAAA
TGCAATTTTACGTACTAAAGCCCAATTTGTGGCAATGAATGAAATTGCAACCATGGAAATAAATCAAGAGTGGCTTGAAG
GAACACAATCTAAACAAGTGACTGCGCAGGGAGTAACTTGGCAAATTGATAAAAAAGCACAATCAACATTAAGCCCAAAA
ATTCAACGCATCGAGTTACAAGTAAGTTTATATAATACTGAACAAGGCAAAGTTGAGGCAGGAATTACCAATCTTGTATT
CTTTAATTATCCTGCTAAAGTCAAAACATCATGA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein I (T2SSI)

(31-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

80

98.291

0.786