Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   EGT69_RS01840 Genome accession   NZ_CP078018
Coordinates   398180..398506 (+) Length   108 a.a.
NCBI ID   WP_004958548.1    Uniprot ID   A0A8I0S2H5
Organism   Acinetobacter junii strain AJ_351     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 393180..403506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT69_RS01815 (EGT69_001815) hemC 393635..394552 (+) 918 WP_099949318.1 hydroxymethylbilane synthase -
  EGT69_RS01820 (EGT69_001820) - 394554..395330 (+) 777 WP_125297247.1 uroporphyrinogen-III synthase -
  EGT69_RS01825 (EGT69_001825) - 395327..396157 (+) 831 WP_042892807.1 hypothetical protein -
  EGT69_RS01830 (EGT69_001830) - 396164..397357 (+) 1194 WP_087540386.1 hypothetical protein -
  EGT69_RS01835 (EGT69_001835) - 397366..397797 (+) 432 WP_004958542.1 acyl-CoA thioesterase -
  EGT69_RS01840 (EGT69_001840) hns 398180..398506 (+) 327 WP_004958548.1 H-NS family nucleoid-associated regulatory protein Regulator
  EGT69_RS01845 (EGT69_001845) gspN 398687..399430 (+) 744 WP_005403545.1 type II secretion system protein N -
  EGT69_RS01850 (EGT69_001850) - 399430..400278 (+) 849 WP_042893622.1 type II secretion system protein N -
  EGT69_RS01855 (EGT69_001855) gspD 400320..402575 (+) 2256 WP_004957392.1 type II secretion system secretin GspD -
  EGT69_RS01860 (EGT69_001860) - 402639..403250 (+) 612 WP_125297246.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12343.00 Da        Isoelectric Point: 5.0355

>NTDB_id=586364 EGT69_RS01840 WP_004958548.1 398180..398506(+) (hns) [Acinetobacter junii strain AJ_351]
MKPDISDLSVEDLKRLQAEAEALIASKKDQAIEDAYNQIIAIAENVGYSVEELLELGEQKRKKTTRKAVEPRYRNKNNAE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=586364 EGT69_RS01840 WP_004958548.1 398180..398506(+) (hns) [Acinetobacter junii strain AJ_351]
ATGAAACCAGATATTAGTGATTTATCTGTTGAAGATCTCAAGCGTTTGCAAGCTGAAGCTGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATTGAAGATGCTTATAATCAAATTATTGCGATTGCTGAAAACGTTGGATACAGCGTTGAAGAGCTTT
TGGAGCTTGGTGAGCAAAAACGTAAGAAAACAACCCGTAAAGCTGTTGAGCCGCGTTACCGTAATAAAAATAATGCAGAA
GAAACTTGGACAGGTCGCGGTAAGCAACCACGTTGGTTAGTTGCAGAATTAGAGAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

90.741

100

0.907