Detailed information NTG0586277

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: KV238_RS08905
• Genome accession: NZ_CP078012
• Coordinates: 1829502..1831595 (+)
• Length: 697 a.a.
• NCBI ID: WP_206152509.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain SEZ_18-036
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1824502..1836595

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KV238_RS08885 (KV238_08870)	-	1824691..1825974 (-)	1284	WP_230923543.1	homoserine dehydrogenase	-
KV238_RS08890 (KV238_08875)	-	1826145..1827110 (+)	966	WP_230923544.1	polysaccharide deacetylase family protein	-
KV238_RS08895 (KV238_08880)	-	1827412..1828218 (-)	807	WP_230923545.1	DNA/RNA non-specific endonuclease	-
KV238_RS08900 (KV238_08885)	ndk	1828712..1829131 (-)	420	WP_037581033.1	nucleoside-diphosphate kinase	-
KV238_RS08905 (KV238_08890)	clpC	1829502..1831595 (+)	2094	WP_206152509.1	AAA family ATPase	Regulator
KV238_RS08910 (KV238_08895)	hupY	1831781..1834789 (-)	3009	WP_230923546.1	leucine-rich repeat adhesin HupY/LrrG	-
KV238_RS08915 (KV238_08900)	yihA	1835154..1835753 (-)	600	WP_230923547.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-

Sequence

Protein

• Length: 697 a.a.
• Molecular weight: 76665.69 Da
• Isoelectric Point: 5.1764

>NTDB_id=586277 KV238_RS08905 WP_206152509.1 1829502..1831595(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
MTTYYGKDPFGNMDDIFNQLMGNIGGYRSENRRYLVNGREMTPEEFQEYRKTGKLAAAEGQDKQAGSLKKDGILTKLGTN
LTEEARQGRLDPVIGRNDEIQATAEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGSFEENIQNMVKEVKEAGNIILFFDEIHQILGAGSAGSDSGSKGLADILKPALSRGELTLIGATTQDEYRNTILK
NAALARRFNEVKVNAPSAEDTFHILMGIRNLYEQHHNVILPDSVLKAAIDYAIQYIPQRSLPDKAIDLVDMTAAHLAAQH
PVTDLKSLEAEIAKQKELQEKAVAAEDFEKALTAKTRIEELQKQINHHSEGQKVTATVNDIAESVERLTGVPVSNMGAND
LERLKEISNRLKGHVIGQDGAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMS
EYSDRTAVSKLIGTTAGYVGYDDNQNTLTERVRRSPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFKNTVI
IATSNAGFGHQAGDSADQEPAIMERIAPYFRPEFLNRFNGVIEFNHLAKKDLQEIVALMLAEVNQTLAKKGISLEVTDDV
KERLIDLGYDHAMGVRPLRRVIEQEIRDRITDYYLDHPTAKHLLASLDQDTITISEK

Nucleotide

• Length: 2094 bp

>NTDB_id=586277 KV238_RS08905 WP_206152509.1 1829502..1831595(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
ATGACAACTTATTATGGAAAAGACCCCTTTGGAAATATGGACGATATTTTTAATCAATTAATGGGAAACATTGGTGGCTA
TCGCAGTGAAAATCGGCGCTATCTTGTCAATGGACGTGAGATGACACCAGAGGAATTTCAGGAATACCGGAAAACCGGTA
AGCTAGCTGCAGCTGAAGGACAAGACAAACAGGCTGGCAGCCTTAAAAAAGACGGCATTCTAACCAAGCTCGGAACAAAT
CTGACTGAAGAAGCTCGTCAAGGAAGGCTAGATCCTGTCATCGGACGAAACGATGAGATTCAAGCGACCGCAGAAATTCT
AGCTAGGCGAACCAAGAATAACCCTGTGCTTGTCGGTGACGCTGGCGTTGGTAAAACTGCTGTTGTCGAAGGTTTAGCCC
AGGCTATCGTCAATGGTGATGTGCCAGCTGCTATCAAAAATAAAGAGATTATCTCAATTGATATTTCTGGCCTTGAGGCT
GGCACACAGTATCGTGGCTCCTTTGAAGAAAACATTCAAAACATGGTTAAAGAGGTTAAAGAGGCTGGTAATATTATCCT
CTTCTTTGACGAAATTCATCAAATTCTTGGTGCAGGGTCAGCTGGTTCAGATTCAGGCTCTAAGGGCTTGGCTGATATTC
TAAAGCCAGCCCTCTCACGCGGTGAGTTGACCTTGATTGGTGCCACAACTCAAGATGAGTATCGCAATACTATTTTAAAA
AATGCTGCCCTTGCTCGTCGTTTCAACGAGGTTAAGGTTAATGCTCCTTCAGCAGAGGATACCTTCCACATTTTGATGGG
CATTCGCAACCTCTACGAGCAGCACCACAATGTGATCCTGCCAGATTCTGTCTTAAAAGCAGCTATTGATTATGCTATCC
AATATATTCCACAACGAAGCCTGCCTGATAAAGCCATTGACCTTGTTGATATGACGGCTGCCCACCTAGCAGCTCAGCAC
CCTGTCACTGATCTAAAGTCACTTGAAGCAGAAATCGCTAAGCAAAAGGAGCTACAGGAAAAGGCTGTTGCAGCAGAAGA
CTTTGAAAAGGCCTTGACTGCTAAGACACGCATTGAGGAGCTCCAAAAGCAAATCAATCATCACAGTGAAGGGCAAAAGG
TCACTGCCACCGTCAATGACATTGCAGAATCTGTTGAACGACTAACTGGTGTCCCAGTCTCAAATATGGGGGCTAATGAT
TTAGAAAGGCTCAAAGAAATCAGTAATCGTCTTAAAGGCCATGTTATCGGACAAGATGGTGCAGTTGAGGCTGTTGCTCG
TGCGATTCGACGCAATAGAGCAGGCTTTGATGATGGCAATCGTCCAATTGGCTCCTTCCTTTTTGTTGGTCCGACTGGTG
TCGGCAAGACCGAGCTGGCTAAGCAGTTAGCCCTTGATATGTTCGGCTCAAAGGACGCTATCATTCGCTTAGACATGTCT
GAATATAGTGACCGCACAGCTGTTTCCAAATTAATCGGAACAACAGCTGGTTATGTTGGCTATGACGACAATCAAAATAC
CCTTACCGAACGTGTCCGTCGCAGTCCTTACTCTATCATCTTGCTTGATGAAATCGAAAAAGCAGACCCACAGGTCATTA
CACTGCTTCTTCAAGTGCTTGATGATGGGCGATTGACAGATGGACAAGGCAACACGATCAATTTCAAAAATACGGTTATC
ATCGCAACCTCTAATGCTGGTTTTGGCCATCAAGCAGGAGATAGTGCTGATCAAGAGCCTGCTATCATGGAGCGTATTGC
ACCTTACTTTAGACCAGAATTCTTGAATCGCTTCAACGGTGTCATCGAATTCAACCATTTAGCGAAAAAGGATCTACAAG
AAATCGTTGCTTTAATGCTAGCAGAGGTGAACCAAACCCTTGCTAAAAAAGGGATTAGCCTTGAGGTGACTGATGATGTT
AAAGAGCGTTTGATCGATCTGGGCTATGATCATGCGATGGGAGTTCGTCCACTTAGACGTGTCATCGAACAAGAAATTCG
TGACCGTATTACTGACTACTACCTGGATCACCCGACTGCTAAGCACCTATTAGCAAGTCTTGATCAAGATACTATTACGA
TAAGTGAGAAGTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (607-679)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-248)

• AAA domain (Cdc48 subfamily) (AAA_2) (441-599)

• AAA lid domain (AAA_lid_9) (257-352)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	48.207	100	0.482
clpE	Streptococcus mutans UA159	48.17	97.991	0.472
clpE	Streptococcus pneumoniae D39	50.794	90.387	0.459
clpE	Streptococcus pneumoniae R6	50.794	90.387	0.459
clpE	Streptococcus pneumoniae Rx1	50.794	90.387	0.459
clpE	Streptococcus pneumoniae TIGR4	50.794	90.387	0.459
clpC	Bacillus subtilis subsp. subtilis str. 168	45.833	89.527	0.41
clpC	Streptococcus mutans UA159	43.226	88.953	0.385
clpC	Streptococcus pneumoniae Rx1	43.678	87.374	0.382
clpC	Streptococcus pneumoniae D39	43.678	87.374	0.382
clpC	Streptococcus pneumoniae TIGR4	43.514	87.374	0.38
clpC	Streptococcus thermophilus LMD-9	42.718	88.666	0.379
clpC	Streptococcus thermophilus LMG 18311	42.557	88.666	0.377
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.326	88.809	0.376