Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KV238_RS04570 Genome accession   NZ_CP078012
Coordinates   917778..919139 (+) Length   453 a.a.
NCBI ID   WP_230923954.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ_18-036     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 912778..924139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV238_RS04555 (KV238_04545) - 914362..916158 (+) 1797 WP_230923898.1 ABC transporter ATP-binding protein -
  KV238_RS04560 (KV238_04550) - 916309..917076 (+) 768 WP_230923899.1 epoxyqueuosine reductase QueH -
  KV238_RS04565 (KV238_04555) - 917265..917711 (+) 447 WP_043029310.1 dUTP diphosphatase -
  KV238_RS04570 (KV238_04560) radA 917778..919139 (+) 1362 WP_230923954.1 DNA repair protein RadA Machinery gene
  KV238_RS04575 (KV238_04565) - 919300..919578 (-) 279 WP_151374905.1 hypothetical protein -
  KV238_RS04580 (KV238_04570) - 919962..920468 (+) 507 Protein_833 beta-class carbonic anhydrase -
  KV238_RS04585 (KV238_04575) - 920596..921309 (+) 714 WP_037580456.1 TIGR00266 family protein -
  KV238_RS04590 (KV238_04580) gltX 921983..923428 (+) 1446 WP_012678593.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49416.95 Da        Isoelectric Point: 7.0274

>NTDB_id=586257 KV238_RS04570 WP_230923954.1 917778..919139(+) (radA) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
MAKKKARFICGECGYQSPKYLGRCPNCSAWSSFVEETEVKDVKNARISLTGEKSKPIKLKHINGVRYQRIQTEMNEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKMRSDRLGQIDNDFYLYAETNMQAIRAEIE
AIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELLQLAKSNHIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFDMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQALVTPTVFGNAR
RMTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKLYAPKSSLQGIDLPKGIEVVGVTTVGEVLKAVFT

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=586257 KV238_RS04570 WP_230923954.1 917778..919139(+) (radA) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
ATAGCTAAGAAAAAGGCGAGGTTTATCTGTGGAGAATGTGGCTATCAGTCACCCAAATATCTGGGGCGCTGCCCTAATTG
CTCTGCTTGGTCTTCCTTTGTAGAGGAGACAGAGGTCAAGGACGTCAAAAATGCCCGTATTAGCCTGACTGGAGAAAAGA
GTAAGCCCATCAAGCTAAAGCATATCAATGGCGTTCGCTACCAGCGTATCCAGACAGAGATGAATGAGTTCAATCGTGTG
CTGGGCGGTGGTGTTGTGCCGGGGAGCTTGGTTTTGATTGGTGGTGATCCTGGTATTGGTAAGTCAACGCTGCTCTTGCA
GGTTTCTATCCAGCTTGCGGATAAGGGAACTGTTTTATATGTCTCTGGAGAGGAATCGGCAGAGCAGATCAAGATGCGCA
GTGACCGCTTGGGACAGATCGACAATGACTTTTACCTCTATGCAGAGACCAATATGCAGGCAATTCGAGCAGAGATTGAA
GCCATTCAGCCGGATTTTTTGATTATTGACTCCATTCAGACCATTATGAGTCCTGATATTTCTGGTGTTCAAGGCTCGGT
TAGTCAGGTGAGAGAGGTCACTGCCGAGCTGCTCCAGCTAGCTAAGTCTAATCATATTGCAACCTTTATTGTAGGACATG
TCACCAAGGAGGGCACCCTAGCAGGGCCTCGTATGCTGGAGCATATGGTTGATACGGTCCTTTATTTTGAGGGCGAGAGG
CATCATACCTTTCGTATCTTGCGAGCGGTTAAAAATCGTTTTGGCTCAACCAATGAGATTGGTATTTTTGACATGCAATC
AGGTGGGCTAGTGGAGGTTCTCAATCCCAGTCAGGTGTTCTTAGAGGAACGATTAGATGGGGCAACAGGCTCTGCTGTGG
TTGTCACCATGGAGGGGAGCAGACCGATTTTGGCAGAGGTGCAGGCCTTAGTCACACCTACTGTTTTTGGTAATGCTAGA
CGAATGACGACTGGGTTGGACTTTAATCGCGTCAGTCTGATTATGGCTGTTTTGGAAAAGCGCTGCGGGCTTTTATTACA
AAATCAAGATGCCTACCTCAAATCAGCAGGAGGTGTGAAGCTAGATGAGCCTGCTATTGATTTGGCAGTTGCTGTGGCTA
TTGCTTCTAGCTACAAGGAAAAACCAACCAACCCTCAGGAGGCCTTCTTAGGAGAGATTGGCTTGACGGGCGAGATTCGG
CGGGTCACTCGTATTGAGCAGCGGATCAATGAGGCTGCAAAGCTTGGCTTTACCAAGCTTTACGCTCCTAAAAGCTCATT
GCAGGGCATTGATCTGCCAAAAGGGATTGAGGTTGTTGGTGTGACGACAGTAGGAGAGGTCTTAAAGGCTGTCTTTACTT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(61-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

84.513

99.779

0.843
  radA Streptococcus pneumoniae D39

84.513

99.779

0.843
  radA Streptococcus pneumoniae R6

84.513

99.779

0.843
  radA Streptococcus pneumoniae TIGR4

84.513

99.779

0.843
  radA Streptococcus mitis NCTC 12261

84.071

99.779

0.839
  radA Streptococcus mitis SK321

84.071

99.779

0.839
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

100

0.62