Detailed information NTG0586242

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: KV238_RS02690
• Genome accession: NZ_CP078012
• Coordinates: 554464..556905 (-)
• Length: 813 a.a.
• NCBI ID: WP_230923796.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain SEZ_18-036
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 549464..561905

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KV238_RS02655 (KV238_02650)	-	550095..550385 (-)	291	WP_043029279.1	hypothetical protein	-
KV238_RS02660 (KV238_02655)	-	550366..550758 (-)	393	WP_043029278.1	hypothetical protein	-
KV238_RS02665 (KV238_02660)	-	550740..552053 (-)	1314	WP_230923795.1	hypothetical protein	-
KV238_RS02670 (KV238_02665)	-	552056..552469 (-)	414	WP_042669846.1	hypothetical protein	-
KV238_RS02675 (KV238_02670)	-	552688..553119 (-)	432	WP_042669845.1	hypothetical protein	-
KV238_RS02680 (KV238_02675)	-	553254..553685 (-)	432	WP_111689777.1	hypothetical protein	-
KV238_RS10715	-	553966..554111 (+)	146	Protein_496	putative holin-like toxin	-
KV238_RS02690 (KV238_02685)	clpC	554464..556905 (-)	2442	WP_230923796.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
KV238_RS02695 (KV238_02690)	-	556905..557366 (-)	462	WP_012677252.1	CtsR family transcriptional regulator	-
KV238_RS02700 (KV238_02695)	-	557538..557741 (-)	204	WP_012514799.1	cold-shock protein	-
KV238_RS02705 (KV238_02700)	-	558120..558770 (-)	651	WP_269204273.1	exotoxin beta-grasp domain-containing protein	-
KV238_RS02715 (KV238_02710)	ahpC	559441..560001 (+)	561	WP_012514798.1	alkyl hydroperoxide reductase subunit C	-
KV238_RS02720 (KV238_02715)	ahpF	560022..561554 (+)	1533	WP_043030357.1	alkyl hydroperoxide reductase subunit F	-

Sequence

Protein

• Length: 813 a.a.
• Molecular weight: 90425.23 Da
• Isoelectric Point: 6.4365

>NTDB_id=586242 KV238_RS02690 WP_230923796.1 554464..556905(-) (clpC) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
MMIYSLKMQDIFNQAQFQAERFDSPYLETWHILLAMVAVDHSLAAMVLSEFERKIRAEEYEAAAILAMGKSPKEVTSVQF
KPQSKALSEILAFAHAICQVTNEHEVGSEHVLFAILLNPDIMASRLLELAGYRLKDSGKGEPRFADLRKAIELNAGYSKE
TIKAIHELRKPKKSKSVGTFSEMMKPQSTAGELSDFTRDLTEMARQGLLEPVIGREKEVSRMVQVLCRKTKNNPVLVGDA
GVGKTALAYGLAQRIANGAIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQLIDDIEADGKIILFVDELHTIMGSGSG
IDSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKILIEEPSVDDAYQILLGLRASYEQYHNVTISDK
AVHTAVKLAQRYLTSKQLPDSAIDLLDEASAMVQSMVKKTQPDFITPLDQALLDGDMSKVSALLAKEDKQPKLKPTAVTE
DDMLHTLSRLSGIPLEKLTQADSKKYLNLEKELHKRVVGQEMAVSAIARAIRRNQSGIRTGRRPIGSFMFLGPTGVGKTE
LAKALAELLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYAVLLFDEVEKAHPDIFNILLQV
LDDGMLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKAIGHDHQTMEKRILEELKKAYRPEFINRIDEKVVFHS
LTQENMRDVVKIMVKPLIAALAEKHISLKFQPSALKYLSEAGYDVEMGARPLRRTLQTEVEDRLAELMLSGELSSGQSLK
IGVSRGKLAFDIA

Nucleotide

• Length: 2442 bp

>NTDB_id=586242 KV238_RS02690 WP_230923796.1 554464..556905(-) (clpC) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
GTGATGATTTATTCATTAAAGATGCAAGACATTTTTAATCAGGCTCAATTTCAAGCAGAGCGCTTTGATAGTCCTTACCT
TGAGACCTGGCATATTTTATTAGCTATGGTAGCTGTTGACCATTCCTTAGCGGCCATGGTGTTAAGCGAATTTGAGCGAA
AGATTAGGGCTGAAGAGTATGAGGCTGCTGCTATTTTAGCCATGGGAAAAAGTCCCAAAGAGGTGACTTCTGTCCAATTC
AAGCCACAATCCAAGGCCTTATCAGAAATACTAGCATTTGCTCATGCTATCTGTCAGGTTACCAATGAGCATGAGGTTGG
CTCAGAGCATGTGCTTTTTGCTATTTTGCTCAATCCGGATATTATGGCCAGTCGTCTGTTAGAGTTGGCAGGCTACAGGC
TCAAGGATTCTGGCAAGGGAGAGCCTAGGTTTGCGGATTTACGTAAGGCTATTGAGCTAAATGCCGGCTATAGCAAGGAA
ACTATTAAGGCGATTCATGAGTTGCGTAAGCCTAAAAAGAGTAAATCAGTAGGCACCTTTTCTGAAATGATGAAGCCACA
GAGTACAGCTGGTGAGCTATCAGACTTTACAAGAGACCTGACAGAGATGGCAAGACAGGGCTTATTAGAGCCAGTCATCG
GACGAGAAAAAGAGGTGTCACGTATGGTTCAGGTGCTTTGTCGTAAGACGAAAAATAATCCTGTTCTTGTTGGTGATGCG
GGTGTCGGAAAAACTGCTCTAGCTTATGGCTTAGCGCAGCGAATTGCTAATGGAGCCATTCCTTATGAATTACAAGACAT
GCGTGTCTTGGAGCTTGACATGATGAGTGTGGTTGCAGGTACCCGTTTTCGTGGGGATTTTGAAGAGCGCATGAATCAAC
TCATTGACGATATTGAAGCAGATGGTAAGATCATTTTGTTTGTCGATGAGCTACATACCATTATGGGATCAGGAAGTGGT
ATTGACAGCACACTTGATGCCGCTAATATTCTAAAGCCAGCCCTTTCTCGCGGTACCCTGCATATGGTTGGCGCTACAAC
TCAAGAGGAATATCAAAAGCACATTGAAAAGGACGCAGCCCTTTCTCGTCGCTTTGCCAAGATATTGATTGAGGAGCCTA
GTGTCGATGATGCTTATCAGATTTTGCTTGGCTTGAGGGCCTCCTATGAACAGTACCATAATGTAACAATCTCTGATAAA
GCTGTTCATACTGCTGTGAAGCTGGCCCAGCGTTACTTGACGAGTAAGCAGCTTCCAGATTCAGCGATTGATCTGCTTGA
TGAAGCCAGTGCGATGGTGCAAAGTATGGTTAAAAAGACGCAGCCTGACTTTATAACGCCGCTTGATCAAGCCCTGCTTG
ATGGTGATATGAGCAAGGTGTCAGCCCTTTTAGCCAAAGAGGATAAGCAACCAAAGCTAAAACCAACAGCAGTCACTGAA
GATGATATGTTACACACCTTAAGCAGGCTATCAGGTATTCCACTAGAAAAACTAACTCAGGCGGATAGTAAAAAATACCT
AAATTTGGAAAAGGAATTGCATAAGCGTGTTGTTGGTCAGGAAATGGCTGTTTCTGCTATTGCACGAGCCATTCGTCGTA
ATCAGTCAGGCATTCGCACAGGCAGACGCCCGATTGGCTCCTTTATGTTTCTTGGTCCAACCGGTGTCGGAAAAACAGAG
CTAGCAAAGGCCTTGGCCGAATTACTCTTTGATGATGAGTCAGCCCTTATTCGTTTTGACATGTCTGAGTACATGGAAAA
ATTTGCAGCCTCTCGTCTCAATGGTGCTCCTCCTGGCTATGTTGGCTATGATGAAGGAGGCGAGCTAACCGAAAAGGTTA
GAAATAAGCCTTATGCCGTTCTTCTTTTTGATGAGGTCGAAAAGGCTCACCCAGACATCTTTAATATCCTGCTGCAGGTC
CTTGATGATGGTATGTTAACAGATAGTCGTGGACGTAAGGTTGATTTTTCAAACACGATTATTATCATGACGAGCAACCT
AGGAGCAACTGCTCTAAGAGATGATAAGACGGTTGGATTTGGCGCTAAAGCGATCGGTCATGACCATCAAACAATGGAAA
AGCGTATTTTGGAGGAATTGAAAAAGGCTTATCGGCCTGAATTTATCAACAGAATTGATGAGAAGGTGGTCTTCCATAGC
CTAACACAGGAAAACATGCGTGATGTGGTGAAAATTATGGTTAAGCCGCTGATTGCAGCCTTGGCAGAAAAGCATATTAG
CCTTAAGTTCCAGCCATCAGCTCTCAAGTACTTGTCTGAAGCTGGTTACGATGTTGAAATGGGCGCTCGCCCACTTCGTC
GCACCTTGCAAACAGAGGTTGAGGACAGGTTAGCAGAATTAATGCTGTCAGGAGAGTTATCAAGCGGTCAAAGCCTCAAG
ATTGGTGTATCACGTGGGAAGCTAGCTTTTGATATCGCTTAA

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (374-457)

• AAA domain (Cdc48 subfamily) (AAA_2) (543-714)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (721-800)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-131)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (15-51)

• ATPase family associated with various cellular activities (AAA) (AAA) (235-367)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus mutans UA159	74.416	100	0.744
clpC	Streptococcus thermophilus LMD-9	72.426	100	0.727
clpC	Streptococcus thermophilus LMG 18311	72.181	100	0.724
clpC	Streptococcus pneumoniae Rx1	65.971	100	0.661
clpC	Streptococcus pneumoniae D39	65.971	100	0.661
clpC	Streptococcus pneumoniae TIGR4	65.848	100	0.659
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	48.862	100	0.502
clpC	Bacillus subtilis subsp. subtilis str. 168	44.072	100	0.453
clpE	Streptococcus mutans UA159	45.356	79.459	0.36