Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   M0D10_RS28970 Genome accession   NZ_CP096207
Coordinates   6176061..6176657 (+) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa TBCF10839     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6171061..6181657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D10_RS28960 (M0D10_28900) - 6172344..6174812 (-) 2469 WP_003114576.1 penicillin-binding protein 1A -
  M0D10_RS28965 (M0D10_28905) pilM 6174997..6176061 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  M0D10_RS28970 (M0D10_28910) pilN 6176061..6176657 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  M0D10_RS28975 (M0D10_28915) pilO 6176654..6177277 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  M0D10_RS28980 (M0D10_28920) comL/pilP 6177274..6177798 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  M0D10_RS28985 (M0D10_28925) - 6177852..6179715 (+) 1864 Protein_5739 type IV pilus secretin PilQ -
  M0D10_RS28990 (M0D10_28930) aroK 6179727..6180245 (+) 519 WP_003095833.1 shikimate kinase AroK -
  M0D10_RS28995 (M0D10_28935) aroB 6180295..6181401 (+) 1107 WP_003162482.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=586186 M0D10_RS28970 WP_003095839.1 6176061..6176657(+) (pilN) [Pseudomonas aeruginosa TBCF10839]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=586186 M0D10_RS28970 WP_003095839.1 6176061..6176657(+) (pilN) [Pseudomonas aeruginosa TBCF10839]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGTCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATTGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369