Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   KUU69_RS25160 Genome accession   NZ_CP078007
Coordinates   5377838..5378395 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain FAHZU40     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5372838..5383395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUU69_RS25140 (KUU69_25120) pilR 5374114..5375451 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  KUU69_RS25145 (KUU69_25125) thiO 5375497..5376591 (-) 1095 WP_023084775.1 glycine oxidase ThiO -
  KUU69_RS25150 (KUU69_25130) - 5376726..5377235 (+) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  KUU69_RS25155 (KUU69_25135) - 5377341..5377847 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  KUU69_RS25160 (KUU69_25140) pilV 5377838..5378395 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  KUU69_RS25165 (KUU69_25145) pilW 5378392..5379216 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  KUU69_RS25170 (KUU69_25150) pilX 5379213..5379800 (+) 588 WP_034037187.1 type 4a pilus minor pilin PilX -
  KUU69_RS25175 (KUU69_25155) pilY1 5379812..5383303 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=586175 KUU69_RS25160 WP_003119423.1 5377838..5378395(+) (pilV) [Pseudomonas aeruginosa strain FAHZU40]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=586175 KUU69_RS25160 WP_003119423.1 5377838..5378395(+) (pilV) [Pseudomonas aeruginosa strain FAHZU40]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995