Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   M0D10_RS23765 Genome accession   NZ_CP096207
Coordinates   5069146..5069511 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa TBCF10839     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5064146..5074511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D10_RS23750 (M0D10_23695) pilK 5065490..5066365 (-) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -
  M0D10_RS23755 (M0D10_23700) pilJ 5066426..5068474 (-) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  M0D10_RS23760 (M0D10_23705) - 5068559..5069095 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  M0D10_RS23765 (M0D10_23710) pilH 5069146..5069511 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  M0D10_RS23770 (M0D10_23715) pilG 5069558..5069965 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  M0D10_RS23775 (M0D10_23720) gshB 5070220..5071173 (+) 954 WP_042853546.1 glutathione synthase -
  M0D10_RS23780 (M0D10_23725) - 5071320..5072213 (+) 894 WP_003162015.1 energy transducer TonB -
  M0D10_RS23785 (M0D10_23730) - 5072262..5072831 (+) 570 WP_003100947.1 YqgE/AlgH family protein -
  M0D10_RS23790 (M0D10_23735) ruvX 5072831..5073265 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  M0D10_RS23795 (M0D10_23740) pyrR 5073377..5073889 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=586159 M0D10_RS23765 WP_003084587.1 5069146..5069511(-) (pilH) [Pseudomonas aeruginosa TBCF10839]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=586159 M0D10_RS23765 WP_003084587.1 5069146..5069511(-) (pilH) [Pseudomonas aeruginosa TBCF10839]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCTATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364