Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   M0D10_RS06090 Genome accession   NZ_CP096207
Coordinates   1290998..1291594 (+) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa TBCF10839     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1285998..1296594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D10_RS06065 (M0D10_06050) - 1286927..1287304 (+) 378 WP_003083354.1 hypothetical protein -
  M0D10_RS06075 (M0D10_06060) - 1287558..1288424 (-) 867 WP_003120462.1 ABC transporter substrate-binding protein -
  M0D10_RS06080 (M0D10_06065) dnaX 1288461..1290548 (+) 2088 WP_023117473.1 DNA polymerase III subunit gamma/tau -
  M0D10_RS06085 (M0D10_06070) - 1290594..1290920 (+) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  M0D10_RS06090 (M0D10_06075) recR 1290998..1291594 (+) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  M0D10_RS06095 (M0D10_06080) - 1291717..1292865 (+) 1149 WP_033945423.1 acyl-CoA dehydrogenase family protein -
  M0D10_RS06100 (M0D10_06085) - 1292878..1293417 (-) 540 WP_003103931.1 CbrC family protein -
  M0D10_RS06105 (M0D10_06090) - 1293491..1294366 (-) 876 WP_003124911.1 SDR family oxidoreductase -
  M0D10_RS06110 (M0D10_06095) - 1294363..1295946 (-) 1584 WP_003121915.1 NAD(P)/FAD-dependent oxidoreductase -
  M0D10_RS06115 (M0D10_06100) - 1296069..1296188 (+) 120 Protein_1206 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=586111 M0D10_RS06090 WP_003087237.1 1290998..1291594(+) (recR) [Pseudomonas aeruginosa TBCF10839]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=586111 M0D10_RS06090 WP_003087237.1 1290998..1291594(+) (recR) [Pseudomonas aeruginosa TBCF10839]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48