Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   MZN67_RS13960 Genome accession   NZ_CP096116
Coordinates   3117087..3117680 (+) Length   197 a.a.
NCBI ID   WP_038839736.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain DFS-2111020037     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3112087..3122680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN67_RS13950 (MZN67_13900) dnaX 3115036..3116706 (+) 1671 WP_374152072.1 DNA polymerase III subunit gamma/tau -
  MZN67_RS13955 (MZN67_13905) - 3116740..3117078 (+) 339 WP_011216606.1 YbaB/EbfC family nucleoid-associated protein -
  MZN67_RS13960 (MZN67_13910) recR 3117087..3117680 (+) 594 WP_038839736.1 recombination mediator RecR Machinery gene
  MZN67_RS13965 (MZN67_13915) - 3117673..3118533 (+) 861 WP_011216608.1 DUF547 domain-containing protein -
  MZN67_RS13970 (MZN67_13920) - 3118530..3120527 (+) 1998 WP_038839738.1 sulfatase-like hydrolase/transferase -
  MZN67_RS13975 (MZN67_13925) - 3120754..3122232 (-) 1479 WP_374152073.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21674.99 Da        Isoelectric Point: 6.6782

>NTDB_id=586014 MZN67_RS13960 WP_038839736.1 3117087..3117680(+) (recR) [Legionella pneumophila subsp. pneumophila strain DFS-2111020037]
MDALSRLVEALRCLPGVGPKSAQRMVFHLLQHQRQRGLHLASCLEQAMKHISHCQQCNNYTEQTLCTLCQNPNRDSTLLC
VVESPADVSAIEQSNSFQGKYFVLMGKISPLDGLGPDDIGLPKLKELIIREKIQEVILALSPSVESQTTIHFIHQLLKDE
AVNISQLAHGIPSGGELEFLDGNTISSALKNRAVINV

Nucleotide


Download         Length: 594 bp        

>NTDB_id=586014 MZN67_RS13960 WP_038839736.1 3117087..3117680(+) (recR) [Legionella pneumophila subsp. pneumophila strain DFS-2111020037]
ATGGATGCTCTAAGCCGCTTGGTAGAGGCGCTTCGCTGTCTTCCTGGTGTGGGACCAAAATCAGCACAAAGAATGGTGTT
CCATTTATTGCAGCACCAAAGACAGCGAGGTTTACACCTTGCCTCCTGTTTGGAACAGGCAATGAAGCACATTAGTCATT
GCCAGCAGTGTAATAATTACACCGAACAAACTCTGTGTACTCTTTGCCAAAACCCCAATCGAGATTCAACATTACTTTGC
GTGGTAGAGAGTCCAGCGGATGTTTCTGCCATAGAACAAAGCAATTCCTTTCAAGGTAAATATTTTGTCCTTATGGGAAA
AATTTCTCCTCTTGATGGCTTGGGACCTGATGACATAGGTCTACCGAAACTTAAGGAGTTAATTATTAGGGAAAAAATTC
AGGAAGTTATTCTTGCATTAAGCCCCAGTGTTGAAAGCCAGACCACAATTCATTTTATTCATCAGTTGCTAAAGGATGAA
GCCGTCAATATCAGTCAGTTAGCACATGGAATACCATCAGGTGGTGAATTAGAATTTTTAGATGGGAATACTATAAGCAG
TGCCCTTAAGAACAGAGCTGTGATTAATGTCTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-168)

RecR protein (RecR_ZnF)

(38-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.513

98.985

0.401
  recR Bacillus subtilis subsp. subtilis str. 168

39.267

96.954

0.381