Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   MZN67_RS11655 Genome accession   NZ_CP096116
Coordinates   2613328..2614683 (-) Length   451 a.a.
NCBI ID   WP_027265192.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain DFS-2111020037     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2608328..2619683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN67_RS11640 (MZN67_11610) pilU 2609068..2610189 (-) 1122 WP_011216215.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  MZN67_RS11645 (MZN67_11615) - 2610279..2612207 (-) 1929 WP_038839261.1 L-gulono-gamma-lactone oxidase -
  MZN67_RS11650 (MZN67_11620) - 2612495..2613331 (-) 837 WP_038839263.1 phytanoyl-CoA dioxygenase family protein -
  MZN67_RS11655 (MZN67_11625) radA/sms 2613328..2614683 (-) 1356 WP_027265192.1 DNA repair protein RadA Machinery gene
  MZN67_RS11660 (MZN67_11630) - 2614914..2615792 (+) 879 WP_038839266.1 lpg2327 family Dot/Icm T4SS effector -
  MZN67_RS11665 (MZN67_11635) lem22 2616056..2616439 (+) 384 WP_038839268.1 Dot/Icm T4SS effector Lem22 -
  MZN67_RS11670 (MZN67_11640) - 2616633..2616863 (+) 231 WP_010948035.1 exodeoxyribonuclease VII small subunit -
  MZN67_RS11675 (MZN67_11645) - 2616844..2617740 (+) 897 WP_161504603.1 polyprenyl synthetase family protein -
  MZN67_RS11680 (MZN67_11650) bioC 2617784..2618638 (-) 855 WP_038839276.1 malonyl-ACP O-methyltransferase BioC -
  MZN67_RS11685 (MZN67_11655) comFC 2618682..2619386 (+) 705 WP_374152043.1 ComF family protein Machinery gene

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49033.75 Da        Isoelectric Point: 7.7495

>NTDB_id=586003 MZN67_RS11655 WP_027265192.1 2613328..2614683(-) (radA/sms) [Legionella pneumophila subsp. pneumophila strain DFS-2111020037]
MMKVKTQFVCNQCAAIFKQWAGQCTQCGAWNSIVEEGIMPESKTLRSGQWANQRSVITAVEDVVMDKIVRMDCGISELNR
VLGGGLVYGSVVLIGGDPGIGKSTLLLQTLANLSMQETVLYVTGEESLQQVAMRAQRLGLPLAGLRLLAETQVESIIAQA
QKEKPRIIVVDSVQTIFTEAISSAPGGVSQVRESAAQLVRYAKMTNTAIFLVGHVTKEGTLAGPRVLEHMVDSVLYFEGQ
NDSRFRVIRAIKNRFGAVNELGVFAMTDKGLKEVANPSAIFLSRQPDPTPGSAVMVTWEGSRPMLVEVQALVDEAHGQQA
KRVTAGLEHNRLAILLAVLHRHGGIATYDQDVFINVVGGVKVTETASDLALLAAVISSLRNRIFDNETIIFGEVGLAGEI
RPVQSGQERIKEAIKHGFKRAIVPFANAPKQQIDSMTVEPVKHLRDVLEKM

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=586003 MZN67_RS11655 WP_027265192.1 2613328..2614683(-) (radA/sms) [Legionella pneumophila subsp. pneumophila strain DFS-2111020037]
ATTATGAAAGTGAAAACCCAGTTTGTTTGTAATCAATGCGCGGCTATTTTTAAACAATGGGCAGGACAATGTACTCAATG
TGGTGCCTGGAATTCCATTGTTGAAGAAGGGATTATGCCTGAAAGCAAGACTTTACGAAGTGGGCAATGGGCTAATCAGC
GCTCTGTTATCACTGCTGTTGAAGACGTCGTCATGGACAAAATAGTACGTATGGATTGTGGTATATCCGAGCTCAACCGG
GTTTTGGGAGGGGGGCTGGTTTATGGCTCGGTTGTTTTGATTGGAGGGGATCCGGGGATCGGTAAATCCACCTTACTGTT
GCAAACGCTGGCTAATTTATCTATGCAAGAAACAGTATTGTATGTGACGGGGGAAGAGTCATTACAACAAGTTGCCATGC
GTGCCCAAAGATTGGGACTACCTTTGGCTGGATTGCGGCTATTAGCAGAAACTCAGGTTGAATCCATCATTGCTCAAGCC
CAAAAGGAAAAGCCGCGAATTATTGTCGTCGATTCAGTACAAACGATATTCACTGAAGCCATAAGTTCTGCTCCGGGAGG
AGTTAGTCAGGTCCGGGAGTCAGCAGCGCAATTGGTGCGTTATGCAAAGATGACTAATACGGCGATTTTCCTGGTAGGTC
ATGTCACTAAGGAAGGAACCTTAGCCGGGCCTCGAGTGTTAGAACATATGGTTGATAGTGTTCTTTATTTTGAAGGGCAA
AACGACAGTCGTTTCAGAGTTATTCGCGCCATTAAAAATCGTTTTGGCGCTGTCAATGAATTGGGTGTATTTGCCATGAC
AGACAAAGGTCTGAAGGAAGTGGCCAATCCCTCAGCTATTTTTTTATCTCGCCAGCCTGATCCTACGCCAGGCAGCGCAG
TGATGGTAACTTGGGAAGGATCAAGACCAATGTTGGTAGAAGTACAGGCATTGGTTGATGAGGCCCACGGCCAGCAAGCG
AAACGCGTTACTGCCGGGCTTGAGCATAATCGCCTGGCGATTTTGTTAGCTGTCTTGCACCGCCATGGAGGTATTGCCAC
TTACGATCAGGACGTTTTTATCAATGTAGTAGGGGGAGTTAAGGTAACGGAAACAGCGAGTGATTTAGCATTGTTGGCCG
CGGTGATTTCCAGTTTGCGTAATCGTATATTTGACAATGAAACCATCATATTCGGTGAGGTAGGATTGGCGGGAGAAATC
AGACCGGTGCAAAGTGGTCAGGAACGCATTAAGGAAGCTATAAAACATGGATTCAAGCGTGCTATAGTTCCTTTTGCCAA
TGCTCCCAAACAGCAAATCGACTCCATGACGGTAGAGCCAGTTAAACATTTGCGAGATGTATTGGAGAAAATGTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(74-219)

Subunit ChlI of Mg-chelatase (ChlI)

(329-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.806

96.009

0.459
  radA Streptococcus pneumoniae Rx1

48.349

94.013

0.455
  radA Streptococcus pneumoniae D39

48.349

94.013

0.455
  radA Streptococcus pneumoniae R6

48.349

94.013

0.455
  radA Streptococcus pneumoniae TIGR4

48.349

94.013

0.455
  radA Streptococcus mitis SK321

48.349

94.013

0.455
  radA Streptococcus mitis NCTC 12261

48.113

94.013

0.452