Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   MZN67_RS04405 Genome accession   NZ_CP096116
Coordinates   974938..976764 (-) Length   608 a.a.
NCBI ID   WP_027266439.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain DFS-2111020037     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 969938..981764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN67_RS04370 (MZN67_04345) - 969967..971919 (+) 1953 WP_027266442.1 heme lyase CcmF/NrfE family subunit -
  MZN67_RS04375 (MZN67_04350) - 971916..972449 (+) 534 WP_374152235.1 DsbE family thiol:disulfide interchange protein -
  MZN67_RS04380 (MZN67_04355) - 972449..972850 (+) 402 WP_010946599.1 cytochrome c-type biogenesis protein -
  MZN67_RS04385 (MZN67_04360) - 972843..973529 (+) 687 WP_027266441.1 tetratricopeptide repeat protein -
  MZN67_RS04390 (MZN67_04365) - 973519..973722 (+) 204 WP_011213332.1 dodecin -
  MZN67_RS04395 (MZN67_04370) - 973778..974182 (+) 405 WP_010946601.1 DUF4156 domain-containing protein -
  MZN67_RS04400 (MZN67_04375) - 974377..974928 (-) 552 WP_027266440.1 DNA-3-methyladenine glycosylase -
  MZN67_RS04405 (MZN67_04380) recQ 974938..976764 (-) 1827 WP_027266439.1 DNA helicase RecQ Machinery gene
  MZN67_RS04410 (MZN67_04385) - 976878..978032 (+) 1155 WP_027266438.1 acyl-CoA dehydrogenase family protein -
  MZN67_RS04415 (MZN67_04390) - 978049..978825 (+) 777 WP_061692132.1 enoyl-CoA hydratase/isomerase family protein -
  MZN67_RS04420 (MZN67_04395) - 978828..979886 (+) 1059 WP_014841242.1 enoyl-CoA hydratase/isomerase family protein -
  MZN67_RS04425 (MZN67_04400) - 980051..980917 (-) 867 WP_010946607.1 Lpg0189 family type II secretion system effector -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 68893.84 Da        Isoelectric Point: 7.7291

>NTDB_id=585967 MZN67_RS04405 WP_027266439.1 974938..976764(-) (recQ) [Legionella pneumophila subsp. pneumophila strain DFS-2111020037]
MGTLAQPSFINPNALAVLKKYFGFDSFRPPQEKIIEDVISGEDVLVLMPTGGGKSLCYQIPAIVRPGVGIVVSPLIALME
DQVTALKLQGIRAAYYNSSLTAEEARNVLNQLHHNELDLLYIAPERLISTSFLDRLSECTISLFAIDEAHCISQWGHDFR
PEYACLGLLKTNFPDIPMIALTATADKQTREDIVTKLNYQPKKYVVSFNRPNIHYKVVPKTNAVKQLNLFLQSDTQQSGI
IYCGTRHTVEHLTAKLQELGFKARAYHAGLPHAERREVQNLFRYDRIDIVVATIAFGMGIDKPNVRFVVHHDLPKSIEGY
YQETGRAGRDGLPAKALLLYDAADSARLRSWIMNIPLDEQRHIETNKLNHMLAFAEASHCRRQILLRYFDEPSHTECKNC
DVCDNPPQTADATEDAQKFLSCIYRLKQSYGLTHTIDVLRGSLSEKIKQSGHEHLSTFGIGKEKSANYWKHLAWQLIHKD
YCLQDMNHFNVLRLTPKAIPLLKGEESISLTIPNNDLNSSKEKGKQNPSFKPESNPLFEKLRSLRRQLADEENKPPFMIF
SDATLHEMAQSKPKNSKQLLNVSGVGQHKLARYGHYFLEALNEFSEIE

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=585967 MZN67_RS04405 WP_027266439.1 974938..976764(-) (recQ) [Legionella pneumophila subsp. pneumophila strain DFS-2111020037]
ATGGGAACTTTAGCGCAACCATCTTTTATAAATCCAAACGCATTGGCTGTTTTAAAAAAATATTTTGGATTTGATTCCTT
CAGACCTCCTCAGGAAAAAATAATTGAGGATGTCATTTCTGGGGAAGATGTACTGGTTTTGATGCCTACTGGAGGGGGAA
AATCGCTATGCTATCAAATTCCAGCCATTGTCCGCCCTGGTGTTGGCATTGTAGTATCTCCTTTAATCGCATTAATGGAA
GATCAAGTAACCGCTCTCAAACTACAGGGTATTCGTGCGGCTTACTACAACTCATCCTTAACCGCCGAAGAGGCTAGAAA
TGTATTAAATCAATTACATCATAATGAATTGGATTTACTCTATATTGCTCCAGAACGTCTTATTAGTACCTCGTTTCTGG
ATCGACTGTCAGAATGTACCATCTCTTTATTTGCTATTGATGAAGCACACTGTATTTCACAATGGGGACATGATTTTCGA
CCTGAATACGCCTGTTTAGGTTTACTGAAAACTAACTTTCCTGACATTCCTATGATTGCTCTGACAGCTACTGCCGATAA
GCAAACACGTGAGGATATTGTTACCAAGTTGAATTATCAACCCAAAAAATACGTTGTTTCATTCAATCGACCGAATATCC
ATTACAAAGTAGTTCCTAAAACAAATGCGGTGAAGCAATTAAATCTGTTTTTACAATCTGATACCCAGCAATCTGGAATT
ATTTATTGTGGAACCCGCCATACAGTCGAACATCTTACAGCGAAATTACAAGAACTTGGATTTAAAGCACGCGCTTATCA
TGCAGGCCTGCCTCATGCGGAGCGGCGTGAGGTACAGAACCTTTTCAGATACGATCGCATTGATATTGTGGTAGCTACTA
TTGCTTTTGGAATGGGTATTGACAAGCCTAATGTTCGCTTTGTTGTTCACCATGATTTACCCAAAAGCATTGAAGGTTAC
TACCAGGAAACAGGTCGTGCAGGACGTGACGGATTACCGGCCAAGGCCCTTCTTCTTTATGATGCTGCGGATAGTGCCCG
TTTACGGTCCTGGATCATGAACATTCCTCTTGATGAGCAAAGACATATAGAAACCAATAAATTAAATCATATGCTTGCTT
TTGCTGAAGCGTCGCATTGTCGTCGTCAAATTTTATTACGCTATTTTGATGAACCTTCTCATACAGAATGTAAAAACTGT
GATGTCTGCGATAACCCACCGCAAACAGCCGATGCAACAGAAGATGCGCAAAAATTTTTATCGTGTATTTATCGATTAAA
ACAAAGCTATGGTTTAACTCATACTATTGATGTCCTGAGAGGTAGTTTATCTGAAAAAATCAAGCAGTCTGGGCATGAGC
ATTTAAGTACCTTTGGAATTGGGAAGGAGAAATCTGCCAATTATTGGAAGCATCTTGCCTGGCAATTAATTCATAAGGAT
TATTGTTTACAGGACATGAATCATTTTAATGTGTTACGCTTAACCCCAAAAGCGATTCCCCTCCTAAAAGGTGAAGAGAG
TATTTCATTAACCATTCCTAACAATGACCTGAATAGCAGTAAAGAGAAAGGCAAGCAGAATCCTTCCTTTAAACCTGAAA
GTAACCCGTTATTTGAAAAGCTTCGTTCGTTAAGACGTCAGTTAGCCGATGAAGAAAACAAACCACCATTTATGATATTC
AGTGATGCTACATTACATGAAATGGCCCAATCAAAACCCAAAAACAGTAAGCAACTACTGAATGTATCTGGGGTTGGGCA
ACATAAATTAGCTCGTTATGGCCATTATTTTCTCGAAGCCTTAAACGAATTTTCAGAAATCGAGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(231-330)

DEAD/DEAH box helicase (DEAD)

(29-189)

RecQ zinc-binding (RecQ_Zn_bind)

(343-403)

HRDC domain (HRDC)

(536-601)

RQC domain (RQC)

(406-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.196

98.191

0.385