Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MZN67_RS00705 Genome accession   NZ_CP096116
Coordinates   162251..164329 (-) Length   692 a.a.
NCBI ID   WP_106183197.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain DFS-2111020037     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 157251..169329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN67_RS00690 (MZN67_00685) pyk 158568..159992 (-) 1425 WP_038836927.1 pyruvate kinase -
  MZN67_RS00695 (MZN67_00690) - 159976..161166 (-) 1191 WP_374152131.1 phosphoglycerate kinase -
  MZN67_RS00700 (MZN67_00695) gap 161177..162169 (-) 993 WP_014840783.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  MZN67_RS00705 (MZN67_00700) recP/tkt 162251..164329 (-) 2079 WP_106183197.1 transketolase Machinery gene
  MZN67_RS00710 (MZN67_00705) - 164515..165852 (+) 1338 WP_374152132.1 hypothetical protein -
  MZN67_RS00715 (MZN67_00710) - 165948..167963 (+) 2016 WP_038836937.1 M3 family metallopeptidase -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 76120.17 Da        Isoelectric Point: 6.2643

>NTDB_id=585955 MZN67_RS00705 WP_106183197.1 162251..164329(-) (recP/tkt) [Legionella pneumophila subsp. pneumophila strain DFS-2111020037]
MNGLLADLCLLSDNSASVKCKRVGMNSFTELANAVRMLSIDAVNQAQSGHPGMPLGMADIATVLWKKFLKFNPKNPHWFN
RDRFVLSNGHGSMLLYSLLHLTGYNLDINELKNFRQLHSKTPGHPEHGHTPGVETTTGPLGQGLANSVGMALAERVLAST
FNHDHYNLVDHYTYTFAGDGCLMEGISHEACSLAGTLGLGKLIVFYDDNGISIDGKVESWFTDDTTSRFKAYNWQVIGPI
DGHDANQIEHAILEARKNNTQPSLIICKTVIGLGSSVAGSEKAHGSPLSAQDINNVREFFNWKHAPFEIPDSIYKQWDHR
EQGEKEEQQWLQLLHEYRQQFPSEHDEFLRRANGDLPDDWQEISAGFLKQCLNNEKAIATRKASQQCIEFFAPILPEMFG
GSADLTGSNNTDWSGSKAITSHNFSGNYLYYGVREFAMAAIMNGLAVHGGFIPYGGTFLVFADYARNAIRLSALMKQRVI
YVLTHDSIGLGEDGPTHQPIEHIAMLRMTPGMTVWRPADLMETAVAWQQSLEHHNGPSALLLSRQNLPALAHGTDAADLI
KKGGYIIADCEGKPDAILIATGSEVQLAITAAEKAKARGLQVRVVSMPCAERFLAQSDDYKNQILPGQVRTRIAIEAASS
AYWHQFVGFDGAVIGLDCFGVSAPATDAFNYLGITVEKIINTLDTLTKQTMV

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=585955 MZN67_RS00705 WP_106183197.1 162251..164329(-) (recP/tkt) [Legionella pneumophila subsp. pneumophila strain DFS-2111020037]
ATGAATGGTCTTCTTGCCGATTTATGCCTTCTGAGCGACAATAGTGCCTCAGTTAAATGCAAAAGAGTAGGCATGAACAG
TTTTACAGAATTAGCTAATGCAGTACGCATGTTAAGCATCGATGCAGTAAACCAGGCTCAATCAGGCCACCCTGGCATGC
CCTTGGGTATGGCTGATATTGCCACCGTTTTATGGAAAAAATTTCTAAAATTCAACCCCAAAAATCCGCACTGGTTTAAC
AGAGACCGTTTTGTTTTATCTAATGGCCATGGTTCCATGCTTCTCTATTCTTTACTGCATTTGACCGGATACAATTTGGA
TATTAACGAGCTTAAAAACTTCCGCCAATTGCATTCAAAAACACCAGGACATCCGGAACATGGGCACACTCCCGGTGTTG
AAACCACAACCGGGCCGTTAGGTCAAGGTTTGGCTAATTCAGTCGGGATGGCCTTAGCAGAACGTGTGCTGGCCAGTACC
TTTAACCACGATCACTATAACCTAGTTGATCATTATACTTATACTTTTGCCGGCGATGGATGCCTGATGGAAGGCATTTC
TCATGAAGCTTGTTCTTTAGCTGGCACTCTTGGTTTGGGAAAGCTCATTGTATTTTATGACGACAATGGGATATCTATTG
ATGGCAAAGTGGAATCCTGGTTTACGGACGATACCACGTCTCGCTTTAAAGCCTACAACTGGCAAGTCATAGGCCCCATC
GATGGCCATGATGCAAATCAAATTGAGCACGCCATATTAGAAGCGCGCAAGAACAACACCCAACCTTCATTAATTATCTG
TAAAACCGTCATAGGACTGGGCTCCTCTGTGGCAGGCAGTGAAAAAGCGCACGGTTCTCCATTGAGTGCCCAAGACATAA
ATAATGTTCGCGAATTTTTTAATTGGAAACATGCTCCCTTCGAAATCCCAGATTCGATATACAAGCAATGGGATCATAGA
GAGCAAGGAGAAAAAGAAGAGCAACAATGGCTGCAGCTCCTGCATGAATACCGGCAACAATTTCCATCGGAACACGATGA
GTTTTTGCGTCGTGCCAATGGCGACCTGCCCGATGATTGGCAAGAAATATCGGCTGGATTCCTAAAACAATGCCTGAACA
ATGAGAAAGCCATAGCAACGCGCAAAGCGTCGCAGCAATGCATAGAGTTTTTCGCGCCAATATTGCCGGAAATGTTTGGC
GGCTCAGCGGATTTGACTGGTTCCAATAATACCGATTGGTCAGGCAGCAAAGCCATCACGTCCCATAATTTTTCCGGAAA
TTACCTTTATTATGGAGTGAGGGAATTTGCCATGGCAGCCATCATGAATGGACTTGCTGTGCATGGAGGATTCATTCCCT
ACGGCGGAACGTTCCTTGTTTTCGCAGATTATGCAAGAAATGCCATCCGTTTAAGCGCTTTAATGAAACAAAGAGTGATA
TACGTATTGACTCATGATTCTATCGGTTTAGGGGAAGATGGCCCGACACACCAACCTATAGAACATATTGCGATGTTAAG
AATGACCCCTGGCATGACGGTCTGGCGCCCTGCTGATTTGATGGAAACCGCTGTTGCATGGCAACAATCGTTAGAACATC
ATAATGGTCCGTCTGCCTTGTTGCTCTCAAGACAAAATCTGCCCGCTTTAGCCCATGGCACCGATGCGGCTGACTTGATT
AAGAAAGGCGGATATATTATTGCAGATTGTGAAGGGAAACCTGATGCTATCCTGATAGCCACTGGTTCAGAAGTTCAACT
GGCTATAACCGCAGCAGAAAAGGCAAAAGCAAGAGGTCTCCAAGTCAGGGTGGTATCCATGCCCTGTGCTGAGCGATTCC
TTGCCCAGAGTGATGATTACAAAAATCAGATATTACCTGGTCAGGTTCGCACACGTATTGCGATAGAAGCAGCTAGCAGT
GCCTATTGGCACCAATTTGTTGGCTTTGATGGCGCTGTCATTGGGCTGGATTGTTTTGGGGTATCAGCTCCTGCTACAGA
TGCTTTTAATTACCTTGGAATTACAGTAGAAAAAATTATCAATACTCTAGATACATTAACCAAACAAACAATGGTGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(377-548)

Transketolase, C-terminal domain (Transketolase_C)

(566-679)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(30-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

46.809

95.087

0.445