Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HXH02_RS09255 Genome accession   NZ_CP096110
Coordinates   1959890..1961317 (-) Length   475 a.a.
NCBI ID   WP_000980556.1    Uniprot ID   -
Organism   Escherichia coli strain DP033     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1954890..1966317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXH02_RS09220 (HXH02_09385) yefM 1955095..1955346 (+) 252 WP_001259253.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  HXH02_RS09225 (HXH02_09390) yoeB 1955343..1955597 (+) 255 WP_000767819.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  HXH02_RS09230 (HXH02_09395) yeeZ 1955680..1956504 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  HXH02_RS09235 (HXH02_09400) yeeY 1956550..1957479 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  HXH02_RS09240 (HXH02_09405) yoeI 1957694..1957756 (+) 63 WP_010723108.1 membrane protein YoeI -
  HXH02_RS09245 (HXH02_09410) plaP 1957746..1959104 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  HXH02_RS09250 (HXH02_09415) tnpA 1959321..1959779 (+) 459 WP_001531805.1 IS200/IS605-like element IS200C family transposase -
  HXH02_RS09255 (HXH02_09420) sbcB 1959890..1961317 (-) 1428 WP_000980556.1 exodeoxyribonuclease I Machinery gene
  HXH02_RS09260 (HXH02_09425) dacD 1961526..1962692 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HXH02_RS09265 (HXH02_09430) sbmC 1962811..1963284 (+) 474 WP_001105368.1 DNA gyrase inhibitor SbmC -
  HXH02_RS09270 (HXH02_09435) yeeA 1963482..1964540 (+) 1059 WP_001200889.1 FUSC family protein -
  HXH02_RS09275 (HXH02_09440) tmaR 1964712..1965041 (+) 330 WP_000450409.1 DUF496 family protein -
  HXH02_RS09280 (HXH02_25820) - 1965142..1965324 (-) 183 WP_001296208.1 EutP/PduV family microcompartment system protein -
  HXH02_RS25700 - 1965387..1965524 (+) 138 Protein_1818 transposase domain-containing protein -
  HXH02_RS09290 (HXH02_09455) - 1965813..1965905 (-) 93 Protein_1819 DUF957 domain-containing protein -
  HXH02_RS09295 (HXH02_09460) yeeW 1965939..1966133 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54437.70 Da        Isoelectric Point: 5.4700

>NTDB_id=585904 HXH02_RS09255 WP_000980556.1 1959890..1961317(-) (sbcB) [Escherichia coli strain DP033]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVILVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=585904 HXH02_RS09255 WP_000980556.1 1959890..1961317(-) (sbcB) [Escherichia coli strain DP033]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTAGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTTTGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583