Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   KUU73_RS24035 Genome accession   NZ_CP077981
Coordinates   5219099..5219656 (+) Length   185 a.a.
NCBI ID   WP_121385994.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain ZPPH14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5214099..5224656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUU73_RS24015 (KUU73_24010) pilR 5215375..5216712 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  KUU73_RS24020 (KUU73_24015) thiO 5216758..5217852 (-) 1095 WP_023084775.1 glycine oxidase ThiO -
  KUU73_RS24025 (KUU73_24020) - 5217987..5218496 (+) 510 WP_121385996.1 Tfp pilus assembly protein FimT/FimU -
  KUU73_RS24030 (KUU73_24025) - 5218602..5219108 (+) 507 WP_019486633.1 Tfp pilus assembly protein FimT/FimU -
  KUU73_RS24035 (KUU73_24030) pilV 5219099..5219656 (+) 558 WP_121385994.1 type 4a pilus minor pilin PilV Machinery gene
  KUU73_RS24040 (KUU73_24035) pilW 5219653..5220477 (+) 825 WP_003123396.1 type 4a pilus minor pilin PilW -
  KUU73_RS24045 (KUU73_24040) pilX 5220474..5221061 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  KUU73_RS24050 (KUU73_24045) pilY1 5221073..5224564 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20083.24 Da        Isoelectric Point: 8.2164

>NTDB_id=585867 KUU73_RS24035 WP_121385994.1 5219099..5219656(+) (pilV) [Pseudomonas aeruginosa strain ZPPH14]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPTSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=585867 KUU73_RS24035 WP_121385994.1 5219099..5219656(+) (pilV) [Pseudomonas aeruginosa strain ZPPH14]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGAATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGACCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.297

100

0.973