Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   MY487_RS08975 Genome accession   NZ_CP096033
Coordinates   1822772..1823392 (-) Length   206 a.a.
NCBI ID   WP_012117646.1    Uniprot ID   A7Z552
Organism   Bacillus amyloliquefaciens strain GL18     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1817772..1828392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY487_RS08940 (MY487_08940) - 1818635..1819069 (+) 435 WP_003154017.1 dUTP diphosphatase -
  MY487_RS08945 (MY487_08945) - 1819158..1819287 (-) 130 Protein_1711 DUF4177 domain-containing protein -
  MY487_RS08950 (MY487_08950) - 1819479..1820300 (+) 822 WP_012117644.1 poly-gamma-glutamate hydrolase family protein -
  MY487_RS08955 (MY487_08955) - 1820409..1820558 (+) 150 WP_007410334.1 hypothetical protein -
  MY487_RS08960 (MY487_08960) - 1820545..1821375 (+) 831 WP_007410333.1 prohibitin family protein -
  MY487_RS08965 (MY487_08965) - 1821403..1821852 (-) 450 WP_012117645.1 YndM family protein -
  MY487_RS08970 (MY487_08970) - 1822006..1822434 (+) 429 WP_003154006.1 hypothetical protein -
  MY487_RS08975 (MY487_08975) dinR/lexA 1822772..1823392 (-) 621 WP_012117646.1 transcriptional repressor LexA Regulator
  MY487_RS08980 (MY487_08980) yneA 1823549..1823860 (+) 312 WP_003154001.1 cell division suppressor protein YneA -
  MY487_RS08985 (MY487_08985) - 1823876..1824526 (+) 651 WP_003153998.1 recombinase family protein -
  MY487_RS08990 (MY487_08990) - 1824595..1824828 (+) 234 WP_003153997.1 DUF896 domain-containing protein -
  MY487_RS08995 (MY487_08995) recP/tkt 1824995..1826998 (+) 2004 WP_007611727.1 transketolase Machinery gene
  MY487_RS09000 (MY487_09000) sirA 1827150..1827596 (+) 447 WP_003153995.1 sporulation inhibitor of replication protein SirA -
  MY487_RS09005 (MY487_09005) - 1827682..1827900 (+) 219 WP_003153994.1 YneF family protein -
  MY487_RS09010 (MY487_09010) - 1827974..1828147 (-) 174 WP_012117647.1 aspartyl-phosphate phosphatase Spo0E family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23076.66 Da        Isoelectric Point: 5.1645

>NTDB_id=585793 MY487_RS08975 WP_012117646.1 1822772..1823392(-) (dinR/lexA) [Bacillus amyloliquefaciens strain GL18]
MTKLSKRQLDILRFIKEEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEVLDEEEVQIPKSQ
VVNVPVIGKVTAGIPITAVENIDEYFPLPDRMVPPGEHVFMLEIMGESMIDAGIFDKDYVIVKQQNTANNGEIVVAMTED
DEATVKRFYKEDNYVRLQPENPTMEPIILQNVSILGKVIGVFRTVH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=585793 MY487_RS08975 WP_012117646.1 1822772..1823392(-) (dinR/lexA) [Bacillus amyloliquefaciens strain GL18]
ATGACGAAGCTATCAAAAAGGCAGCTTGATATCCTGCGTTTTATTAAAGAAGAGGTAAAAACGAAAGGATATCCGCCTTC
TGTAAGAGAGATAGGAGAAGCAGTAGGACTGGCTTCCAGTTCAACCGTGCACGGCCATTTGGCGCGGCTGGAGACAAAAG
GCCTGATCAGACGGGACCCAACTAAACCGAGGGCGATTGAGGTATTGGATGAAGAAGAAGTCCAAATTCCGAAAAGCCAG
GTCGTAAACGTTCCGGTCATCGGGAAAGTGACGGCGGGTATTCCGATTACGGCTGTTGAAAATATCGACGAGTATTTTCC
GCTTCCTGACCGGATGGTTCCTCCGGGCGAACATGTCTTTATGTTAGAAATCATGGGAGAAAGTATGATCGACGCCGGCA
TTTTTGACAAAGATTACGTCATTGTCAAACAGCAAAACACGGCCAATAACGGAGAAATCGTCGTAGCTATGACCGAAGAT
GATGAAGCGACGGTCAAGCGCTTCTATAAAGAAGACAATTATGTGCGGCTGCAGCCGGAAAATCCGACGATGGAGCCGAT
TATCCTGCAAAACGTAAGCATTTTGGGGAAAGTTATCGGCGTATTCAGGACCGTACATTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(85-199)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z552

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

93.204

100

0.932