Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   MY487_RS08570 Genome accession   NZ_CP096033
Coordinates   1687904..1688335 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain GL18     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1682904..1693335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY487_RS08550 (MY487_08550) spoVS 1683474..1683734 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  MY487_RS08555 (MY487_08555) tdh 1683992..1685038 (+) 1047 WP_041482192.1 L-threonine 3-dehydrogenase -
  MY487_RS08560 (MY487_08560) - 1685051..1686229 (+) 1179 WP_098081411.1 glycine C-acetyltransferase -
  MY487_RS08565 (MY487_08565) miaB 1686372..1687901 (+) 1530 WP_012117585.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  MY487_RS08570 (MY487_08570) ymcA 1687904..1688335 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  MY487_RS08575 (MY487_08575) cotE 1688588..1689133 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  MY487_RS08580 (MY487_08580) hexA 1689252..1691837 (+) 2586 WP_041482253.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=585789 MY487_RS08570 WP_003154113.1 1687904..1688335(+) (ymcA) [Bacillus amyloliquefaciens strain GL18]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=585789 MY487_RS08570 WP_003154113.1 1687904..1688335(+) (ymcA) [Bacillus amyloliquefaciens strain GL18]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916