Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   DESGI_RS13355 Genome accession   NC_021184
Coordinates   2831511..2832452 (-) Length   313 a.a.
NCBI ID   WP_006523622.1    Uniprot ID   R4KNR6
Organism   Desulfoscipio gibsoniae DSM 7213     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2826511..2837452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DESGI_RS13330 (Desgi_2789) - 2827255..2828427 (+) 1173 WP_006523627.1 Ger(x)C family spore germination protein -
  DESGI_RS13335 (Desgi_2790) - 2828738..2828923 (+) 186 WP_006523626.1 hypothetical protein -
  DESGI_RS13340 (Desgi_2791) - 2828977..2829360 (+) 384 WP_006523625.1 PadR family transcriptional regulator -
  DESGI_RS13345 (Desgi_2792) - 2829350..2830171 (+) 822 WP_006523624.1 extracellular solute-binding protein -
  DESGI_RS13350 (Desgi_2793) - 2830281..2831249 (+) 969 WP_006523623.1 sulfite exporter TauE/SafE family protein -
  DESGI_RS13355 (Desgi_2794) pilA 2831511..2832452 (-) 942 WP_006523622.1 signal recognition particle-docking protein FtsY Machinery gene
  DESGI_RS13360 (Desgi_2795) rnc 2832516..2833256 (-) 741 WP_006523621.1 ribonuclease III -
  DESGI_RS13365 (Desgi_2796) fabF 2833258..2834511 (-) 1254 WP_006523620.1 beta-ketoacyl-ACP synthase II -
  DESGI_RS13370 (Desgi_2797) acpP 2834604..2834837 (-) 234 WP_006523619.1 acyl carrier protein -
  DESGI_RS13375 (Desgi_2798) fabG 2834889..2835632 (-) 744 WP_006523618.1 3-oxoacyl-ACP reductase FabG -
  DESGI_RS13380 (Desgi_2799) fabD 2835633..2836571 (-) 939 WP_006523617.1 ACP S-malonyltransferase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 33870.90 Da        Isoelectric Point: 5.0652

>NTDB_id=58578 DESGI_RS13355 WP_006523622.1 2831511..2832452(-) (pilA) [Desulfoscipio gibsoniae DSM 7213]
MGFFNKLKDSLSKTRKNFVEKIDSIVTGRKVIDEELYEELEEALIQADVGIDAALELVENLRGEVKKRRIGEPEELRAVL
KELIQGILGEETTSLNIDGEQPAVIMVVGVNGVGKTTTIGKLAHYYKENGKSVLLSAADTFRAAAIDQLEIWGNRVGVAV
IKHSEGSDPAAVAFDSLQAARARKIDVLIVDTAGRLHTKSNLMEELKKVHRVLGREMPNAPHEVLLVLDATTGQNAISQA
SLFKEAVGVTGVALTKLDGTAKGGVVIAIKQGLDIPIKMIGVGEGIDDLRPFDAREFADALFERENKAVEQVG

Nucleotide


Download         Length: 942 bp        

>NTDB_id=58578 DESGI_RS13355 WP_006523622.1 2831511..2832452(-) (pilA) [Desulfoscipio gibsoniae DSM 7213]
ATGGGTTTTTTTAATAAGTTAAAGGATAGCCTGAGTAAAACTAGAAAAAATTTTGTCGAAAAAATTGATTCTATAGTCAC
TGGTCGCAAGGTAATCGATGAAGAATTATACGAAGAGCTGGAAGAAGCACTGATCCAGGCTGACGTAGGTATTGATGCAG
CGCTGGAGCTGGTGGAAAATCTACGCGGCGAAGTTAAAAAACGCCGGATTGGTGAACCGGAGGAATTACGGGCTGTATTA
AAGGAGCTTATCCAGGGAATTTTAGGCGAGGAAACAACATCATTAAATATAGATGGCGAACAGCCGGCGGTAATTATGGT
GGTGGGTGTCAACGGCGTGGGCAAGACCACTACCATAGGCAAATTGGCTCACTATTACAAGGAAAACGGTAAAAGTGTAT
TGCTTAGCGCTGCGGATACCTTCCGGGCGGCAGCCATAGACCAGCTGGAAATATGGGGCAACCGGGTGGGGGTGGCTGTA
ATTAAGCACTCCGAGGGCTCCGATCCCGCCGCGGTAGCCTTTGATTCGCTGCAGGCTGCCCGGGCCAGGAAAATTGATGT
GCTTATCGTAGATACTGCGGGCCGGCTGCACACCAAAAGTAACCTGATGGAGGAATTGAAGAAGGTGCACCGGGTGCTGG
GCCGGGAAATGCCGAATGCCCCTCATGAGGTGCTGCTGGTGCTGGATGCCACCACAGGGCAAAATGCCATCAGCCAGGCC
AGCCTTTTTAAAGAGGCCGTGGGGGTGACCGGGGTAGCCCTGACCAAATTGGACGGCACTGCTAAGGGCGGTGTGGTAAT
TGCCATTAAACAGGGTTTGGATATACCTATCAAGATGATTGGTGTCGGCGAGGGCATAGACGATTTGCGTCCCTTTGATG
CCCGGGAATTTGCCGATGCACTGTTCGAAAGGGAAAACAAAGCTGTGGAGCAGGTAGGTTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(19-82)

SRP54-type protein, GTPase domain (SRP54)

(102-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R4KNR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

50

97.125

0.486

Multiple sequence alignment