Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   MY487_RS05150 Genome accession   NZ_CP096033
Coordinates   988584..991466 (+) Length   960 a.a.
NCBI ID   WP_012117205.1    Uniprot ID   A7Z304
Organism   Bacillus amyloliquefaciens strain GL18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 983584..996466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY487_RS05125 (MY487_05125) - 984022..984789 (+) 768 WP_012117202.1 enoyl-CoA hydratase -
  MY487_RS05130 (MY487_05130) - 984814..984999 (-) 186 WP_015239502.1 YhzD family protein -
  MY487_RS05135 (MY487_05135) - 985105..986001 (+) 897 WP_007409231.1 ABC transporter ATP-binding protein -
  MY487_RS05140 (MY487_05140) - 985994..987253 (+) 1260 WP_012117203.1 ABC transporter permease -
  MY487_RS05145 (MY487_05145) - 987364..988587 (+) 1224 WP_012117204.1 DNA repair exonuclease -
  MY487_RS05150 (MY487_05150) sbcE 988584..991466 (+) 2883 WP_012117205.1 AAA family ATPase Machinery gene
  MY487_RS05155 (MY487_05155) yhaM 991540..992484 (+) 945 WP_012117206.1 3'-5' exoribonuclease YhaM -
  MY487_RS05160 (MY487_05160) - 992599..992826 (+) 228 WP_012117207.1 sporulation YhaL family protein -
  MY487_RS05165 (MY487_05165) - 992865..993716 (-) 852 WP_007409226.1 peptidylprolyl isomerase -
  MY487_RS05170 (MY487_05170) yhzE1 993875..993961 (+) 87 WP_017417375.1 sporulation protein YhzE1 -
  MY487_RS05175 (MY487_05175) yhzE2 994086..994172 (+) 87 WP_003155248.1 sporulation protein YhzE2 -
  MY487_RS05180 (MY487_05180) - 994229..994447 (-) 219 WP_003155245.1 hypothetical protein -
  MY487_RS05185 (MY487_05185) - 994508..995038 (-) 531 WP_007409225.1 DUF3267 domain-containing protein -
  MY487_RS05190 (MY487_05190) - 995249..995590 (+) 342 WP_003155243.1 YhaI family protein -
  MY487_RS05195 (MY487_05195) - 995587..996198 (-) 612 WP_003155240.1 HTH-type transcriptional regulator Hpr -

Sequence

Protein


Download         Length: 960 a.a.        Molecular weight: 109608.60 Da        Isoelectric Point: 7.4855

>NTDB_id=585751 MY487_RS05150 WP_012117205.1 988584..991466(+) (sbcE) [Bacillus amyloliquefaciens strain GL18]
MKITAMHIYQYGKFSDRSFQLSDSPVQVIYGLNEAGKTTLMSFIKSVLFGFPKSKKYEPKNGGVYGGAVELKHGDHGAVK
IERTKGAAEKVRVYTASGEIKDGEWLKQLLSDTDRALYEAIYSFDVFGLQEIQAFNRDKIGEFLLYSSLFGSEAAAKLDG
RLAKELDRMYKPNGRNPRLNQELDTLKRLSAQLKQAEAAEAGYHSLLEEKKSAGGRLQDAEARLKDITEEIKTVKSAIEA
KPLADKKTALESELSSYPEALKQFPKDGMHQLEKYESHLHPKAARLEGLRAKSAELRRQADLLAPNEDLLQKERQLQELS
GEQHMYESRGEQLAAIQSQIRQTSARVSSGLQQLGRHEEDGILSLNTDYEYEWRLQEAVQSAGQARERKTQLDAIFEQAR
LELEEAERKHALTAENILDPAVRKEKEAALQSYKQTADTEGNEWQAHVQHLEKQRAKQKKLFLGAGILFIAIFAMLKEWL
PAALFSGALLLYMLSGMQKPLPSERGGPGHKKKKPAISKEAADLLQEELWRDGRHRQQLIADQAVLEQKEAAYERVIRQY
EEWEAEMAPSEKQAELFMNELGFSGSPSHLLDAYHVMKDVKKEILNKHELTIEAGRLQKLQRAFEDRVKKLSPSDGRELS
VKERLHVLLAQAERAREEAKRKQALETDLLHAQEQMRELNEEVHYYEQQVKQLFMAAGAKNREHFCELARLTESRRETER
QLREIKTHLSGIGGKQLEPYMSRTVSELEHTVVQKETEKKTLEEKSAQLREQTALLTVKQEQLESSGLVSDLKQQTEMQK
ERVKKTAKEWAALQTVRHIIREKMERHKKVTLPRLLETAGALYVPLTDGRYHKLYFSEADDSIMVMRKDGTVFSAGELSQ
AACEQLYAAIRFALASERESAVSLPFLLDDSFVHFDRQRLQRLFDVLNQLSEGGRQILYFTCHEHVSRSFHSGQVMRLLS

Nucleotide


Download         Length: 2883 bp        

>NTDB_id=585751 MY487_RS05150 WP_012117205.1 988584..991466(+) (sbcE) [Bacillus amyloliquefaciens strain GL18]
ATGAAAATAACGGCGATGCATATTTACCAATACGGAAAATTTTCCGACCGAAGTTTTCAGCTGTCAGATTCTCCCGTGCA
AGTGATCTACGGGTTAAATGAAGCGGGCAAAACGACATTGATGTCCTTTATCAAAAGCGTGCTGTTCGGTTTTCCGAAAT
CAAAAAAATACGAACCGAAAAACGGCGGGGTTTACGGCGGCGCTGTGGAATTGAAGCATGGCGATCACGGCGCTGTCAAA
ATCGAACGGACAAAAGGCGCTGCCGAAAAAGTCAGAGTGTATACGGCTTCAGGCGAAATCAAGGACGGAGAATGGCTCAA
ACAGCTTCTCTCCGATACAGACCGGGCGCTGTACGAAGCGATCTATTCGTTCGATGTATTCGGACTGCAGGAGATTCAAG
CTTTTAACCGGGACAAAATCGGCGAGTTTCTCCTGTATTCGAGCTTATTCGGATCGGAAGCGGCGGCAAAGCTTGACGGG
CGACTGGCAAAAGAACTTGACAGGATGTATAAGCCGAACGGGCGGAACCCCCGCTTAAATCAGGAGTTGGATACATTAAA
GCGGCTCAGCGCCCAGCTGAAACAGGCGGAAGCTGCGGAAGCGGGCTATCACAGCCTTCTGGAAGAGAAAAAAAGCGCCG
GCGGCCGTTTGCAGGATGCCGAAGCACGATTGAAAGACATAACTGAAGAAATCAAAACAGTAAAATCAGCGATAGAAGCA
AAGCCGCTCGCAGACAAAAAAACAGCCTTGGAAAGCGAACTTTCTTCTTATCCGGAAGCATTGAAGCAATTCCCGAAGGA
CGGAATGCATCAGCTTGAAAAATACGAATCGCATCTCCATCCGAAAGCGGCCCGTCTTGAGGGGCTTCGGGCAAAATCGG
CTGAACTCAGGCGGCAGGCTGATCTGCTCGCTCCAAATGAGGACTTGCTGCAAAAAGAGCGGCAGCTGCAGGAGCTTTCC
GGCGAGCAGCATATGTACGAATCGCGCGGCGAACAGCTTGCCGCCATCCAATCACAGATCCGGCAGACATCTGCCCGCGT
TTCGTCAGGATTGCAGCAGCTCGGAAGACATGAGGAGGACGGCATTCTTTCACTGAACACCGATTATGAATATGAATGGC
GGCTGCAGGAAGCCGTGCAGAGCGCCGGACAGGCAAGAGAAAGAAAGACACAGCTTGATGCGATTTTCGAACAAGCGCGG
CTGGAGCTGGAAGAAGCCGAACGAAAACATGCCTTGACGGCGGAAAACATTTTGGACCCCGCTGTCAGGAAAGAAAAAGA
AGCCGCTTTACAATCATATAAGCAAACGGCTGATACAGAAGGAAACGAATGGCAGGCACATGTTCAGCATCTGGAAAAAC
AGCGCGCCAAACAAAAAAAGCTCTTTCTCGGTGCGGGCATTCTGTTCATTGCGATTTTCGCTATGTTAAAGGAATGGCTG
CCCGCCGCCCTTTTTAGCGGTGCTCTGCTGCTGTATATGCTGTCCGGCATGCAAAAACCGCTGCCGTCAGAAAGAGGAGG
GCCCGGACACAAGAAAAAGAAGCCGGCGATCTCTAAAGAAGCGGCTGATCTTCTGCAGGAAGAGCTTTGGCGTGACGGCC
GGCACCGGCAGCAGCTGATTGCGGATCAAGCCGTGCTTGAACAGAAAGAAGCGGCATATGAAAGAGTCATCCGCCAATAT
GAAGAATGGGAGGCGGAAATGGCGCCGTCTGAAAAACAGGCGGAACTTTTTATGAATGAACTGGGGTTTTCAGGAAGTCC
TTCCCATCTTCTTGACGCATATCATGTGATGAAAGATGTCAAAAAAGAAATCCTTAACAAGCATGAGCTGACCATTGAAG
CGGGCAGGCTGCAAAAGCTGCAAAGAGCATTTGAGGACCGGGTCAAAAAGCTGAGTCCTTCAGACGGAAGGGAGCTGTCC
GTAAAAGAAAGACTGCACGTTTTGCTGGCGCAGGCGGAACGGGCCCGTGAGGAAGCAAAACGAAAGCAGGCGCTCGAAAC
GGATCTGCTGCATGCACAAGAGCAAATGCGTGAATTAAACGAAGAAGTTCATTACTACGAACAGCAGGTCAAACAGCTTT
TCATGGCGGCAGGCGCAAAAAACCGCGAACACTTTTGTGAACTCGCCAGGCTGACTGAAAGCCGCCGGGAAACAGAGCGG
CAGCTGCGCGAAATCAAAACGCACTTGTCCGGCATAGGCGGAAAACAGCTGGAGCCGTACATGAGCCGCACAGTGTCCGA
ACTTGAACATACAGTCGTTCAGAAGGAAACAGAGAAAAAAACGCTTGAGGAAAAAAGCGCCCAGCTCCGTGAGCAAACCG
CTTTATTAACGGTGAAGCAAGAGCAGCTGGAGTCCTCGGGGCTTGTATCCGATTTAAAACAGCAGACAGAAATGCAGAAG
GAGCGCGTGAAAAAAACCGCTAAAGAGTGGGCCGCATTACAGACGGTCAGACACATTATCAGGGAAAAAATGGAGCGGCA
TAAAAAAGTGACGCTTCCCCGTCTGTTAGAAACCGCCGGTGCATTATACGTACCGCTTACGGACGGACGCTATCACAAAT
TGTATTTTTCCGAGGCTGATGATTCCATTATGGTCATGCGGAAAGACGGAACGGTGTTTTCTGCAGGCGAACTGTCACAG
GCGGCATGCGAGCAGCTTTATGCGGCGATTCGTTTTGCCCTTGCGTCAGAGAGGGAATCTGCGGTATCACTGCCGTTTTT
ACTTGATGACAGTTTTGTCCATTTTGACAGGCAGCGGCTGCAGCGGCTGTTTGATGTGCTGAATCAGCTTTCAGAAGGCG
GGCGGCAGATACTTTATTTCACCTGCCATGAGCATGTCAGCCGGTCTTTTCACAGCGGACAAGTCATGCGGCTCCTGTCA
TAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(1-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z304

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

57.365

100

0.576