Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KTJ86_RS04340 Genome accession   NZ_CP077969
Coordinates   905864..906493 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain JM83     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 900864..911493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTJ86_RS04320 ycbZ 901265..903025 (-) 1761 WP_000156518.1 Lon protease family protein -
  KTJ86_RS04325 matP 903211..903663 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KTJ86_RS04330 ompA 903739..904779 (-) 1041 WP_000750416.1 porin OmpA -
  KTJ86_RS04335 sulA 905136..905645 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KTJ86_RS04340 sxy/tfoX 905864..906493 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KTJ86_RS04345 yccS 906456..908618 (-) 2163 WP_000875061.1 YccS family putative transporter -
  KTJ86_RS04350 yccF 908628..909074 (-) 447 WP_001261235.1 YccF domain-containing protein -
  KTJ86_RS04355 helD 909197..911251 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=585744 KTJ86_RS04340 WP_000839153.1 905864..906493(+) (sxy/tfoX) [Escherichia coli strain JM83]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=585744 KTJ86_RS04340 WP_000839153.1 905864..906493(+) (sxy/tfoX) [Escherichia coli strain JM83]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1