Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   MY487_RS02320 Genome accession   NZ_CP096033
Coordinates   456413..457546 (+) Length   377 a.a.
NCBI ID   WP_012116843.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GL18     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 451413..462546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY487_RS02285 (MY487_02285) - 452003..452449 (+) 447 WP_012116838.1 NUDIX hydrolase -
  MY487_RS02290 (MY487_02290) - 452507..454228 (+) 1722 WP_012116839.1 pyruvate oxidase -
  MY487_RS02295 (MY487_02295) - 454344..454780 (-) 437 Protein_412 GNAT family N-acetyltransferase -
  MY487_RS02300 (MY487_02300) - 454906..455010 (+) 105 Protein_413 peptidoglycan-binding domain-containing protein -
  MY487_RS02305 (MY487_02305) - 455217..455429 (-) 213 WP_012116841.1 spore germination protein -
  MY487_RS02310 (MY487_02310) - 455811..456104 (+) 294 WP_023356715.1 hypothetical protein -
  MY487_RS02315 (MY487_02315) - 456073..456276 (+) 204 WP_077411029.1 DUF2651 family protein -
  MY487_RS02320 (MY487_02320) rapC 456413..457546 (+) 1134 WP_012116843.1 Rap family tetratricopeptide repeat protein Regulator
  MY487_RS19345 - 457543..457677 (+) 135 WP_007609509.1 hypothetical protein -
  MY487_RS02325 (MY487_02325) - 458028..458258 (-) 231 WP_012116845.1 hypothetical protein -
  MY487_RS19410 - 458446..458625 (-) 180 WP_007410196.1 hypothetical protein -
  MY487_RS02330 (MY487_02330) - 458639..459196 (-) 558 WP_012116846.1 hypothetical protein -
  MY487_RS02335 (MY487_02335) - 459293..459871 (-) 579 WP_012116847.1 hypothetical protein -
  MY487_RS02340 (MY487_02340) - 460097..460363 (-) 267 WP_012116848.1 hypothetical protein -
  MY487_RS02345 (MY487_02345) - 460468..461745 (-) 1278 WP_123912783.1 Nramp family divalent metal transporter -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 44756.16 Da        Isoelectric Point: 5.3016

>NTDB_id=585741 MY487_RS02320 WP_012116843.1 456413..457546(+) (rapC) [Bacillus amyloliquefaciens strain GL18]
MDQVLPSSQVGVKINEWYKMIRQFSVPDAEILKAEVEQEIEEMEEDQDLLVFYSLMCFRHQLMLDSLEPEDRYRDRPTVD
ELLEKIEKPQKRLTGLLKYYSLFFRGMYEFDHKEYVEAIGYYRKAERELSAVSDEMEQAEFHYKIADAYYQIDQHFVSLN
HLKKAKQLFEKSQLYKVKVIGCNMMVGANMYDMYRLTEAESYYREALSIARGLEEEKVKRIIGVIFHNLGLVYLRGKNLI
AAEENFKKAIDVKEHIDTVYGVRSLYMMANVLYQCDKAKEARFFYETALNRARTSNEEEYLAKLKIINSLYEEYNETEVK
QSLGYLEEKRLWSDFAELTEKLGDFHFEKRNYAEGRNFLKKTIHAQTQILKVTEAIS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=585741 MY487_RS02320 WP_012116843.1 456413..457546(+) (rapC) [Bacillus amyloliquefaciens strain GL18]
GTGGACCAAGTTTTACCGTCGTCCCAAGTTGGTGTCAAGATCAATGAATGGTACAAAATGATTCGCCAGTTCAGTGTGCC
TGATGCTGAGATTTTAAAGGCTGAAGTAGAACAGGAAATAGAGGAGATGGAAGAGGATCAGGATTTGCTTGTTTTTTATT
CATTGATGTGCTTTCGTCACCAATTGATGTTAGATTCCTTGGAGCCGGAAGACAGATATCGAGATCGCCCCACAGTCGAC
GAACTACTTGAAAAAATAGAAAAGCCGCAAAAAAGACTTACAGGCCTCTTGAAGTATTACTCATTATTTTTTCGTGGAAT
GTATGAATTTGATCATAAAGAGTATGTTGAAGCGATAGGCTATTATCGCAAAGCAGAGAGAGAGTTGAGTGCTGTATCAG
ATGAAATGGAGCAAGCTGAATTTCATTACAAAATAGCTGATGCCTATTATCAAATTGATCAGCACTTTGTTTCCCTCAAT
CATTTAAAAAAAGCCAAGCAATTGTTTGAAAAAAGTCAATTATACAAAGTGAAAGTGATTGGCTGTAATATGATGGTCGG
TGCTAACATGTACGATATGTACAGGCTGACGGAGGCAGAATCATATTATCGGGAAGCATTAAGTATCGCCCGTGGGTTGG
AAGAGGAAAAAGTGAAAAGAATTATCGGAGTGATTTTTCATAACTTAGGTTTAGTTTATTTAAGAGGGAAAAATTTAATT
GCTGCTGAAGAGAATTTCAAAAAGGCAATAGACGTGAAAGAACATATTGATACAGTGTATGGTGTGAGATCATTATATAT
GATGGCAAATGTCCTGTACCAATGTGATAAAGCAAAGGAAGCGCGTTTCTTTTATGAAACGGCTTTAAATCGTGCTCGGA
CTTCTAATGAAGAGGAATATTTGGCTAAATTAAAAATCATTAATTCATTGTACGAAGAATATAATGAAACAGAAGTGAAA
CAAAGCTTAGGTTACTTGGAAGAGAAACGCCTTTGGTCTGATTTCGCAGAGCTAACCGAAAAATTAGGTGACTTTCATTT
TGAAAAGAGAAACTATGCAGAGGGAAGAAACTTTTTAAAGAAAACCATACATGCCCAAACACAAATACTTAAGGTTACGG
AGGCTATATCATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(142-296)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

37.802

98.939

0.374