Detailed information NTG0585728

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: MY487_RS01535
• Genome accession: NZ_CP096033
• Coordinates: 274998..276119 (+)
• Length: 373 a.a.
• NCBI ID: WP_011996281.1
• Uniprot ID: A7Z131
• Organism: Bacillus amyloliquefaciens strain GL18
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 269998..281119

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MY487_RS01515 (MY487_01515)	-	270307..271302 (-)	996	WP_007409036.1	DUF5105 domain-containing protein	-
MY487_RS01520 (MY487_01520)	-	271429..272829 (+)	1401	WP_041482174.1	YcdB/YcdC domain-containing protein	-
MY487_RS01525 (MY487_01525)	-	273030..274388 (+)	1359	WP_023356694.1	YcdB/YcdC domain-containing protein	-
MY487_RS01530 (MY487_01530)	-	274385..274888 (-)	504	WP_011996280.1	M15 family metallopeptidase	-
MY487_RS01535 (MY487_01535)	rapF	274998..276119 (+)	1122	WP_011996281.1	Rap family tetratricopeptide repeat protein	Regulator
MY487_RS01540 (MY487_01540)	-	276235..277014 (+)	780	WP_011996282.1	glucose 1-dehydrogenase	-
MY487_RS01545 (MY487_01545)	-	277098..278777 (+)	1680	WP_011996283.1	alpha-glucosidase	-
MY487_RS01550 (MY487_01550)	-	278963..279922 (+)	960	WP_011996284.1	metal ABC transporter substrate-binding protein	-
MY487_RS01555 (MY487_01555)	-	279977..280672 (+)	696	WP_011996285.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44317.53 Da
• Isoelectric Point: 5.0806

>NTDB_id=585728 MY487_RS01535 WP_011996281.1 274998..276119(+) (rapF) [Bacillus amyloliquefaciens strain GL18]
MKSKIPSEEVAVKMNEWYKLIRAFEADQAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAFYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=585728 MY487_RS01535 WP_011996281.1 274998..276119(+) (rapF) [Bacillus amyloliquefaciens strain GL18]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TCAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAACACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTTTTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

3D structure

• AlphaFold DB: A7Z131

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.054	99.732	0.399