Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   KTR69_RS12760 Genome accession   NZ_CP077960
Coordinates   2503566..2504537 (-) Length   323 a.a.
NCBI ID   WP_306300702.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain WHA07     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2505230..2535564 2503566..2504537 flank 693


Gene organization within MGE regions


Location: 2503566..2535564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTR69_RS12760 ceuB 2503566..2504537 (-) 972 WP_306300702.1 ABC transporter permease Machinery gene
  KTR69_RS12765 - 2504664..2505080 (-) 417 WP_196968047.1 FixH family protein -
  KTR69_RS12770 nrdF 2505230..2506201 (-) 972 WP_218696891.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  KTR69_RS12775 nrdE 2506230..2508335 (-) 2106 WP_058612033.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  KTR69_RS12780 nrdI 2508298..2508696 (-) 399 WP_025905413.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  KTR69_RS12785 - 2509071..2509955 (+) 885 WP_048539939.1 DMT family transporter -
  KTR69_RS12790 queF 2509955..2510455 (+) 501 WP_048539940.1 preQ(1) synthase -
  KTR69_RS12795 - 2510749..2512263 (+) 1515 WP_048539941.1 peptide MFS transporter -
  KTR69_RS12800 - 2512608..2514110 (+) 1503 WP_218696892.1 peptide MFS transporter -
  KTR69_RS12805 - 2514150..2514731 (-) 582 WP_196968044.1 5'(3')-deoxyribonucleotidase -
  KTR69_RS12810 hisC 2514796..2515863 (-) 1068 WP_218696893.1 histidinol-phosphate transaminase -
  KTR69_RS12815 - 2515966..2517480 (-) 1515 WP_065380987.1 ABC transporter permease/substrate-binding protein -
  KTR69_RS12820 - 2517477..2518439 (-) 963 WP_048539946.1 ABC transporter ATP-binding protein -
  KTR69_RS12825 recQ 2518529..2520307 (-) 1779 WP_218696894.1 DNA helicase RecQ -
  KTR69_RS12830 - 2520330..2522201 (-) 1872 WP_058611505.1 ABC-F family ATP-binding cassette domain-containing protein -
  KTR69_RS12835 - 2522287..2523102 (+) 816 WP_037588700.1 ZIP family metal transporter -
  KTR69_RS12840 ltaS 2524077..2526017 (-) 1941 WP_049319712.1 polyglycerol-phosphate lipoteichoic acid synthase LtaS -
  KTR69_RS12845 - 2526218..2527222 (-) 1005 WP_058611507.1 biotin-dependent carboxyltransferase family protein -
  KTR69_RS12850 - 2527213..2527914 (-) 702 WP_049319710.1 carboxyltransferase domain-containing protein -
  KTR69_RS12855 - 2527955..2528167 (-) 213 WP_049319709.1 hypothetical protein -
  KTR69_RS12860 - 2528229..2529977 (-) 1749 WP_070369019.1 chorismate-binding protein -
  KTR69_RS12865 - 2529955..2530557 (-) 603 WP_058611509.1 aminodeoxychorismate/anthranilate synthase component II -
  KTR69_RS12870 queC 2530761..2531429 (+) 669 WP_058611510.1 7-cyano-7-deazaguanine synthase QueC -
  KTR69_RS12875 queD 2531429..2531860 (+) 432 WP_218696895.1 6-carboxytetrahydropterin synthase QueD -
  KTR69_RS12880 queE 2531853..2532563 (+) 711 WP_065380976.1 7-carboxy-7-deazaguanine synthase QueE -
  KTR69_RS12885 - 2532660..2533328 (-) 669 WP_058611513.1 DUF1129 family protein -
  KTR69_RS12890 - 2533321..2533659 (-) 339 WP_058611514.1 PadR family transcriptional regulator -
  KTR69_RS12895 - 2533845..2534486 (+) 642 WP_037589261.1 hypothetical protein -
  KTR69_RS12900 - 2534538..2534786 (+) 249 WP_025904751.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  KTR69_RS12905 - 2534842..2535564 (-) 723 WP_058611515.1 YwiC-like family protein -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35491.00 Da        Isoelectric Point: 10.7243

>NTDB_id=585715 KTR69_RS12760 WP_306300702.1 2503566..2504537(-) (ceuB) [Mammaliicoccus sciuri strain WHA07]
MGKFLMRLDVLIILLVIATFFSIFIGVSEVKPLHILNLTDEQKNILVSSRIPRTVSIIISGSSLAICGLIMQQLTRNKFV
SPTTAGTMDWARLGILISLIAFPEANILLKLLFATLLSLFGTMLFMQILRRIQFKDIIFIPLVGIMLGNIVSSFSSFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLILAFIFANQFTIAGMGKDFSVNLGLNYQKVVNIGLIIASIITALVV
VTVGMMPFLGLIIPNLVSIFRGDHLKNALPHTAVFGALFVMICDVIGRLIIFPYEITIGLTIGVIGSFIFIVLLMKGRSR
NAQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=585715 KTR69_RS12760 WP_306300702.1 2503566..2504537(-) (ceuB) [Mammaliicoccus sciuri strain WHA07]
ATGGGAAAGTTTTTAATGCGTTTAGATGTTTTGATTATTTTATTAGTAATTGCAACGTTCTTCTCTATATTTATAGGTGT
TTCAGAAGTAAAACCATTACATATATTAAATTTAACAGACGAACAGAAGAACATTTTAGTATCAAGTAGAATTCCAAGAA
CAGTCAGTATTATTATCTCAGGTAGCTCGTTAGCTATTTGTGGACTGATTATGCAACAGCTTACAAGAAATAAATTCGTT
TCTCCAACAACTGCAGGGACAATGGATTGGGCCAGATTAGGTATATTAATTTCTCTTATCGCTTTTCCAGAAGCCAACAT
ACTACTTAAATTATTATTTGCTACATTATTAAGTTTATTTGGAACAATGCTATTCATGCAAATTCTCCGTAGAATTCAAT
TTAAAGATATTATTTTTATACCATTAGTTGGTATTATGCTCGGAAACATAGTGTCAAGTTTTTCATCTTTTGTTGCATTA
CGTACAAATGCTGTACAAAGTATTGGTAATTTTATGCAAGGTAATTTCTCAATTATTACAAGCGGTAGATATGAAATTCT
TTATATTAGTATTCCGTTATTGATTTTAGCATTTATATTTGCGAATCAATTTACGATTGCTGGTATGGGTAAAGATTTTA
GTGTGAATTTAGGACTTAATTATCAAAAAGTCGTCAATATCGGACTGATTATTGCCTCAATCATTACGGCACTTGTTGTT
GTAACAGTTGGTATGATGCCATTCTTAGGTTTAATTATTCCTAACTTAGTTTCAATATTCAGAGGAGATCATTTAAAAAA
TGCATTGCCGCATACAGCTGTATTTGGTGCATTGTTTGTTATGATTTGTGATGTAATAGGTCGATTAATTATATTCCCTT
ATGAAATTACAATTGGTTTAACAATTGGTGTGATTGGTAGTTTCATATTTATAGTATTGCTGATGAAAGGACGTTCAAGA
AATGCTCAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.789

98.142

0.498