Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CLOPA_RS21445 Genome accession   NC_021182
Coordinates   4603775..4605127 (-) Length   450 a.a.
NCBI ID   WP_015617519.1    Uniprot ID   -
Organism   Clostridium pasteurianum BC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4598775..4610127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLOPA_RS21420 (Clopa_4538) ispD 4599501..4600202 (-) 702 WP_015617514.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  CLOPA_RS21425 (Clopa_4539) - 4600223..4601326 (-) 1104 WP_015617515.1 PIN/TRAM domain-containing protein -
  CLOPA_RS21430 (Clopa_4540) - 4601455..4601925 (-) 471 WP_015617516.1 CarD family transcriptional regulator -
  CLOPA_RS21435 (Clopa_4541) - 4602075..4602479 (+) 405 WP_015617517.1 hypothetical protein -
  CLOPA_RS21440 (Clopa_4542) disA 4602683..4603756 (-) 1074 WP_015617518.1 DNA integrity scanning diadenylate cyclase DisA -
  CLOPA_RS21445 (Clopa_4543) radA 4603775..4605127 (-) 1353 WP_015617519.1 DNA repair protein RadA Machinery gene
  CLOPA_RS21450 (Clopa_4544) - 4605397..4607835 (-) 2439 WP_015617520.1 ATP-dependent Clp protease ATP-binding subunit -
  CLOPA_RS21455 (Clopa_4545) - 4607849..4608871 (-) 1023 WP_015617521.1 protein arginine kinase -
  CLOPA_RS21460 (Clopa_4546) - 4608873..4609397 (-) 525 WP_015617522.1 UvrB/UvrC motif-containing protein -
  CLOPA_RS21465 (Clopa_4547) - 4609471..4609929 (-) 459 WP_015617523.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 49519.34 Da        Isoelectric Point: 7.8238

>NTDB_id=58563 CLOPA_RS21445 WP_015617519.1 4603775..4605127(-) (radA) [Clostridium pasteurianum BC1]
MPKSKTTFVCQECGYESLKWVGKCPGCGTWNSFVEELTKQNKNSTFLDKNSESKCIVNIKSGEHERYNTGIKELNRVLGG
GLVRGSLTLISGSPGIGKSTLLLQSANNIAEKYGKVLYVSGEESEEQIKMRGDRLKVASNNLFILSEINMEVIMNQIEQL
EPKFVIIDSIQTIFKPSVASAPGSVSQVRECANEIMRTGKLKGISFFIVAHVTKQGELAGPRVLEHMVDSVLSFEGERTE
EFRILRTIKNRFGTTSEIGVFEMNEEGLIEVDNPSNVFLEETSFKQEGSIVIGIMEGTRPILVEIQALVSETKAIMPRRT
AVGVDSSRLNLILAVLEKKLKIPFYNCDVYVNVVGGLDIAGTFGDLGLALALISSIKSKKINIDKMIAVGEIGLTGEVRP
ISYCDRIVNEAEKMGFTNIIVPVRNKGKIKTNTMNVFGVSSLREAVNKVF

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=58563 CLOPA_RS21445 WP_015617519.1 4603775..4605127(-) (radA) [Clostridium pasteurianum BC1]
ATGCCAAAAAGTAAAACTACTTTTGTATGTCAGGAATGTGGTTATGAGTCTTTAAAATGGGTGGGTAAGTGTCCTGGCTG
TGGGACATGGAATAGTTTTGTTGAGGAATTAACAAAGCAAAATAAAAATAGTACATTTTTAGATAAAAACAGTGAATCTA
AATGTATAGTTAATATAAAATCGGGAGAACATGAAAGGTATAATACAGGTATAAAAGAATTAAATAGAGTATTAGGTGGA
GGATTGGTTAGAGGTTCTTTGACTTTGATTTCTGGATCACCTGGCATTGGAAAATCAACTTTATTATTACAAAGTGCCAA
TAATATTGCTGAGAAATATGGAAAAGTATTATATGTTTCGGGAGAAGAATCAGAAGAACAGATTAAAATGAGAGGCGATA
GACTTAAGGTAGCTTCTAATAATCTTTTTATTCTTTCCGAAATCAATATGGAGGTTATTATGAATCAAATAGAGCAGCTA
GAACCTAAGTTTGTTATTATTGATTCAATTCAGACGATTTTTAAACCTTCAGTAGCTTCAGCTCCAGGAAGTGTATCTCA
AGTTAGAGAATGCGCAAATGAAATAATGAGAACAGGTAAGCTTAAAGGAATATCTTTTTTTATAGTTGCACACGTGACAA
AACAAGGGGAATTAGCAGGCCCTAGGGTATTAGAACATATGGTTGACAGTGTGCTTTCTTTTGAGGGTGAAAGAACTGAA
GAATTTAGGATACTGAGAACTATAAAAAACCGTTTTGGAACTACCAGTGAAATTGGAGTTTTTGAAATGAATGAAGAAGG
ACTTATTGAAGTAGATAATCCTTCAAATGTATTTTTAGAAGAGACTAGTTTTAAACAAGAAGGTTCTATTGTTATAGGGA
TTATGGAAGGTACTAGGCCAATTTTAGTTGAAATTCAAGCTCTAGTCAGTGAAACTAAGGCTATTATGCCAAGAAGGACA
GCTGTTGGAGTTGATTCTTCAAGGCTTAATTTAATATTAGCAGTATTAGAAAAAAAGTTAAAAATACCTTTTTACAATTG
TGATGTTTATGTAAATGTAGTTGGTGGTTTGGATATAGCTGGTACCTTTGGAGACTTGGGTTTAGCTCTTGCTTTAATTT
CAAGCATAAAGAGTAAAAAAATAAATATAGATAAAATGATAGCTGTTGGAGAAATAGGACTTACAGGTGAAGTAAGACCT
ATTTCATACTGTGATAGAATTGTAAATGAAGCAGAAAAAATGGGCTTTACAAATATTATAGTTCCTGTAAGAAATAAGGG
AAAAATAAAAACAAATACTATGAATGTATTTGGAGTGTCTTCATTAAGAGAAGCTGTAAATAAAGTATTTTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(340-425)

AAA domain (AAA_25)

(64-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.773

100

0.511
  radA Streptococcus mitis NCTC 12261

48.678

100

0.491
  radA Streptococcus pneumoniae Rx1

48.678

100

0.491
  radA Streptococcus pneumoniae D39

48.678

100

0.491
  radA Streptococcus pneumoniae R6

48.678

100

0.491
  radA Streptococcus pneumoniae TIGR4

48.678

100

0.491
  radA Streptococcus mitis SK321

48.678

100

0.491

Multiple sequence alignment