Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   MDRSPN_RS07655 Genome accession   NZ_AP018391
Coordinates   1489140..1489406 (-) Length   88 a.a.
NCBI ID   WP_001814186.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain MDRSPN001     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1484140..1494406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MDRSPN_RS07645 (MDRSPN_01457) metF 1485700..1486566 (-) 867 WP_001277841.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  MDRSPN_RS07650 (MDRSPN_01458) metE 1486630..1488879 (-) 2250 WP_000108216.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  MDRSPN_RS07655 HI0659 1489140..1489406 (-) 267 WP_001814186.1 helix-turn-helix domain-containing protein Machinery gene
  MDRSPN_RS07660 - 1489532..1489935 (-) 404 Protein_1472 helix-turn-helix domain-containing protein -
  MDRSPN_RS07665 (MDRSPN_01460) - 1490082..1491083 (+) 1002 WP_000597984.1 endonuclease/exonuclease/phosphatase family protein -
  MDRSPN_RS07670 (MDRSPN_01461) pheT 1491151..1493556 (-) 2406 WP_120164263.1 phenylalanine--tRNA ligase subunit beta -
  MDRSPN_RS07675 (MDRSPN_01462) - 1493633..1494142 (-) 510 WP_000619939.1 N-acetyltransferase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9641.11 Da        Isoelectric Point: 4.2720

>NTDB_id=58557 MDRSPN_RS07655 WP_001814186.1 1489140..1489406(-) (HI0659) [Streptococcus pneumoniae strain MDRSPN001]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=58557 MDRSPN_RS07655 WP_001814186.1 1489140..1489406(-) (HI0659) [Streptococcus pneumoniae strain MDRSPN001]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

55.844

87.5

0.489

Multiple sequence alignment