Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   MW889_RS13090 Genome accession   NZ_CP095867
Coordinates   2778360..2778875 (+) Length   171 a.a.
NCBI ID   WP_004712040.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain 11J360     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2773360..2783875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW889_RS13070 (MW889_13080) - 2773717..2775177 (+) 1461 WP_002051328.1 amino acid permease -
  MW889_RS13075 (MW889_13085) - 2775456..2776661 (+) 1206 WP_004885349.1 RtcB family protein -
  MW889_RS13080 (MW889_13090) - 2776665..2776835 (+) 171 WP_286418947.1 hypothetical protein -
  MW889_RS13085 (MW889_13095) omp38 2776952..2777980 (-) 1029 WP_004885345.1 outer membrane protein Omp38 -
  MW889_RS13090 (MW889_13100) fimT 2778360..2778875 (+) 516 WP_004712040.1 GspH/FimT family pseudopilin Machinery gene
  MW889_RS13095 (MW889_13105) - 2778984..2780159 (+) 1176 WP_004885343.1 thiolase family protein -
  MW889_RS13100 (MW889_13110) - 2780285..2780728 (+) 444 WP_002051396.1 VOC family protein -
  MW889_RS13105 (MW889_13115) - 2780781..2781134 (-) 354 WP_002051463.1 SMR family transporter -
  MW889_RS13110 (MW889_13120) - 2781213..2781698 (-) 486 WP_004885341.1 DUF934 domain-containing protein -
  MW889_RS13115 (MW889_13125) - 2781691..2783334 (-) 1644 WP_004885339.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19424.63 Da        Isoelectric Point: 8.8332

>NTDB_id=585385 MW889_RS13090 WP_004712040.1 2778360..2778875(+) (fimT) [Acinetobacter nosocomialis strain 11J360]
MFRSPGFTIVELSITLVILVIMSVIAIPLYHQFMASVELKNTSRVLTIHIQKAKSDAIIKHKNIVLCPSSDQVICNTDWN
KHLISFIDSNRNLQHDLNEELLTSIDLNHTYGSMKLQRFGKKQNSIVFQGSSGLPIESNGSFIYCSYDQLKNFKLVLSKM
GHVRVEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=585385 MW889_RS13090 WP_004712040.1 2778360..2778875(+) (fimT) [Acinetobacter nosocomialis strain 11J360]
ATGTTTAGATCTCCTGGTTTTACTATAGTTGAGCTCTCTATAACCCTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAATTAAAAAATACTTCGCGTGTACTCACAATTCATATACAAAAAGCCA
AATCGGACGCAATTATTAAGCATAAGAACATTGTTCTGTGTCCAAGTTCAGATCAGGTAATCTGTAATACAGATTGGAAT
AAACACTTAATCAGCTTCATAGATAGTAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTAACCTCTATAGATCT
TAACCATACTTATGGTTCTATGAAATTACAACGTTTTGGTAAAAAACAAAATAGTATTGTTTTTCAAGGAAGCTCGGGAC
TTCCAATCGAGTCTAATGGTAGTTTTATTTACTGTTCTTATGATCAGCTTAAAAATTTTAAATTAGTTCTTAGCAAAATG
GGGCATGTGCGTGTCGAAGAATTAAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(49-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427