Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   MW889_RS06250 Genome accession   NZ_CP095867
Coordinates   1319868..1320503 (+) Length   211 a.a.
NCBI ID   WP_004887494.1    Uniprot ID   A0AA36NWB2
Organism   Acinetobacter nosocomialis strain 11J360     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1314868..1325503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW889_RS06225 (MW889_06245) - 1315708..1316721 (+) 1014 WP_004887496.1 phosphotransferase -
  MW889_RS06230 (MW889_06250) murU 1316721..1317410 (+) 690 WP_002049766.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  MW889_RS06235 (MW889_06255) rsmG 1317498..1318130 (+) 633 WP_002050181.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  MW889_RS06240 (MW889_06260) - 1318152..1318934 (+) 783 WP_002050124.1 AAA family ATPase -
  MW889_RS06245 (MW889_06265) - 1318931..1319818 (+) 888 WP_004709129.1 ParB/RepB/Spo0J family partition protein -
  MW889_RS06250 (MW889_06270) exbB 1319868..1320503 (+) 636 WP_004887494.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MW889_RS06255 (MW889_06275) - 1320519..1320947 (+) 429 WP_004887492.1 biopolymer transporter ExbD -
  MW889_RS06260 (MW889_06280) msbA 1320944..1322671 (+) 1728 WP_006580783.1 lipid A export permease/ATP-binding protein MsbA -
  MW889_RS06265 (MW889_06285) lpxK 1322674..1323684 (+) 1011 WP_004887486.1 tetraacyldisaccharide 4'-kinase -
  MW889_RS06270 (MW889_06290) kdsB 1323694..1324455 (+) 762 WP_004887485.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MW889_RS06275 (MW889_06295) - 1324467..1325447 (+) 981 WP_004887483.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23135.97 Da        Isoelectric Point: 6.6434

>NTDB_id=585362 MW889_RS06250 WP_004887494.1 1319868..1320503(+) (exbB) [Acinetobacter nosocomialis strain 11J360]
MWELVKAGGWLMLPLILCSILTVAISIERFIRLRRSQVLPKALMSDGSADISHIITNLEQDTDASSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQNYIAELEQQSTLFHASLFYKRSSVVQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=585362 MW889_RS06250 WP_004887494.1 1319868..1320503(+) (exbB) [Acinetobacter nosocomialis strain 11J360]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACGGTCGCTATTAGTAT
TGAACGTTTTATACGTTTGAGACGTTCACAAGTTTTGCCTAAAGCACTGATGAGTGATGGTAGTGCAGATATTTCTCATA
TCATTACAAATTTGGAGCAAGATACTGATGCCTCAAGTACAGCATTAGGAAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAGCATGGAGAGCAATTTGCTCGGGCTCAAATGGAAGCAATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTGGGAACTTTAAGTGCTATAGCACCTTTGCTTGGGTTACTTGGAACAGTTGTAGGGATTATTGAGTCTTTTCTCG
TGATTGATTTTGGTTCGGCAGGTAGTCCAAGTTTAATGATTCCTGGTATTTCAAAGGCCTTGATCACGACAGCGGTTGGA
ATGCTCATTGCAATTCCTGCACTTATTTCTTATCGTTATTTTCAGAGAGTGGTACAAAATTACATTGCGGAGTTAGAGCA
ACAATCTACACTCTTTCATGCATCATTGTTTTATAAACGTTCTTCTGTTGTGCAAGAACATCGCCGTGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36NWB2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

41.981

100

0.422