Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   MYG04_RS16720 Genome accession   NZ_CP095856
Coordinates   3468628..3469104 (-) Length   158 a.a.
NCBI ID   WP_001186727.1    Uniprot ID   -
Organism   Escherichia coli strain EC6563     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3463628..3474104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYG04_RS25785 - 3464503..3464617 (-) 115 Protein_3259 integrase -
  MYG04_RS16680 (MYG04_16680) - 3465126..3465452 (-) 327 WP_000779483.1 type II toxin-antitoxin system RelE/ParE family toxin -
  MYG04_RS16685 (MYG04_16685) - 3465449..3465712 (-) 264 WP_001143297.1 type II toxin-antitoxin system ParD family antitoxin -
  MYG04_RS16690 (MYG04_16690) - 3465784..3466650 (-) 867 WP_021547704.1 DUF4942 domain-containing protein -
  MYG04_RS16695 (MYG04_16695) - 3466735..3466932 (-) 198 WP_000839239.1 DUF957 domain-containing protein -
  MYG04_RS16700 (MYG04_16700) - 3466944..3467432 (-) 489 WP_000761678.1 DUF5983 family protein -
  MYG04_RS16705 (MYG04_16705) - 3467429..3467806 (-) 378 WP_021547705.1 TA system toxin CbtA family protein -
  MYG04_RS16710 (MYG04_16710) - 3467896..3468264 (-) 369 WP_001389198.1 type IV toxin-antitoxin system YeeU family antitoxin -
  MYG04_RS16715 (MYG04_16715) - 3468344..3468565 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  MYG04_RS16720 (MYG04_16720) radC 3468628..3469104 (-) 477 WP_001186727.1 RadC family protein Machinery gene
  MYG04_RS16725 (MYG04_16725) - 3469120..3469605 (-) 486 WP_021547706.1 antirestriction protein -
  MYG04_RS16730 (MYG04_16730) - 3469697..3470515 (-) 819 WP_021547707.1 DUF932 domain-containing protein -
  MYG04_RS16735 (MYG04_16735) - 3470605..3470838 (-) 234 WP_001278282.1 DUF905 family protein -
  MYG04_RS16740 (MYG04_16740) - 3470844..3471521 (-) 678 WP_001097567.1 hypothetical protein -
  MYG04_RS16745 (MYG04_16745) - 3471672..3472352 (-) 681 WP_001282912.1 WYL domain-containing protein -
  MYG04_RS16750 (MYG04_16750) - 3472555..3473439 (-) 885 WP_072643486.1 GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17646.30 Da        Isoelectric Point: 7.2020

>NTDB_id=585330 MYG04_RS16720 WP_001186727.1 3468628..3469104(-) (radC) [Escherichia coli strain EC6563]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=585330 MYG04_RS16720 WP_001186727.1 3468628..3469104(-) (radC) [Escherichia coli strain EC6563]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399