Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   MYG04_RS14680 Genome accession   NZ_CP095856
Coordinates   3029698..3030690 (+) Length   330 a.a.
NCBI ID   WP_247777656.1    Uniprot ID   -
Organism   Escherichia coli strain EC6563     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3024698..3035690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYG04_RS14655 (MYG04_14655) rbsD 3024822..3025241 (+) 420 WP_000715936.1 D-ribose pyranase -
  MYG04_RS14660 (MYG04_14660) rbsA 3025249..3026754 (+) 1506 WP_000387752.1 ribose ABC transporter ATP-binding protein RbsA -
  MYG04_RS14665 (MYG04_14665) rbsC 3026759..3027724 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  MYG04_RS14670 (MYG04_14670) rbsB 3027749..3028639 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  MYG04_RS14675 (MYG04_14675) rbsK 3028765..3029694 (+) 930 WP_012767772.1 ribokinase -
  MYG04_RS14680 (MYG04_14680) cytR 3029698..3030690 (+) 993 WP_247777656.1 ribose operon transcriptional repressor RbsR Regulator
  MYG04_RS14685 (MYG04_14685) mdtD 3030656..3032083 (-) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  MYG04_RS14690 (MYG04_14690) yieP 3032106..3032798 (-) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36637.94 Da        Isoelectric Point: 5.2141

>NTDB_id=585314 MYG04_RS14680 WP_247777656.1 3029698..3030690(+) (cytR) [Escherichia coli strain EC6563]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSPLARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=585314 MYG04_RS14680 WP_247777656.1 3029698..3030690(+) (cytR) [Escherichia coli strain EC6563]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCACCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCAACTCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364