Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MYG04_RS05690 Genome accession   NZ_CP095856
Coordinates   1127208..1128635 (+) Length   475 a.a.
NCBI ID   WP_000980620.1    Uniprot ID   -
Organism   Escherichia coli strain EC6563     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1122208..1133635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYG04_RS05660 (MYG04_05660) - 1122749..1123108 (-) 360 WP_032160190.1 hypothetical protein -
  MYG04_RS05665 (MYG04_05665) - 1123087..1123383 (+) 297 Protein_1117 EutP/PduV family microcompartment system protein -
  MYG04_RS05670 (MYG04_05670) tmaR 1123484..1123813 (-) 330 WP_000450409.1 DUF496 family protein -
  MYG04_RS05675 (MYG04_05675) yeeA 1123985..1125043 (-) 1059 WP_001200891.1 FUSC family protein -
  MYG04_RS05680 (MYG04_05680) sbmC 1125241..1125714 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  MYG04_RS05685 (MYG04_05685) dacD 1125833..1126999 (-) 1167 WP_108429988.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  MYG04_RS05690 (MYG04_05690) sbcB 1127208..1128635 (+) 1428 WP_000980620.1 exodeoxyribonuclease I Machinery gene
  MYG04_RS05695 (MYG04_05695) tsuB 1128678..1128905 (-) 228 WP_000985280.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  MYG04_RS05700 (MYG04_05700) tsuA 1128919..1129977 (-) 1059 WP_000492315.1 thiosulfate utilization transporter TsuA/YeeE -
  MYG04_RS05705 (MYG04_05705) plaP 1130156..1131514 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  MYG04_RS05710 (MYG04_05710) yoeI 1131504..1131566 (-) 63 WP_010723108.1 membrane protein YoeI -
  MYG04_RS05715 (MYG04_05715) yeeY 1131781..1132710 (-) 930 WP_024190947.1 LysR substrate-binding domain-containing protein -
  MYG04_RS05720 (MYG04_05720) yeeZ 1132756..1133580 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4740

>NTDB_id=585274 MYG04_RS05690 WP_000980620.1 1127208..1128635(+) (sbcB) [Escherichia coli strain EC6563]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=585274 MYG04_RS05690 WP_000980620.1 1127208..1128635(+) (sbcB) [Escherichia coli strain EC6563]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCATTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577