Detailed information    

insolico Bioinformatically predicted

Overview


Name   braS   Type   Regulator
Locus tag   KU536_RS00040 Genome accession   NZ_CP077924
Coordinates   7018..7905 (+) Length   295 a.a.
NCBI ID   WP_000143420.1    Uniprot ID   A0A2S6DP21
Organism   Staphylococcus aureus strain 200     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 7156..67491 7018..7905 flank -749


Gene organization within MGE regions


Location: 7018..67491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU536_RS00040 (KU536_00040) braS 7018..7905 (+) 888 WP_000143420.1 nisin susceptibility-associated two-component system sensor histidine kinase NsaS Regulator
  KU536_RS00045 (KU536_00045) - 8013..8768 (+) 756 WP_000923768.1 ABC transporter ATP-binding protein -
  KU536_RS00050 (KU536_00050) - 8765..10765 (+) 2001 WP_000776741.1 ABC transporter permease -
  KU536_RS00055 (KU536_00055) - 11434..11547 (+) 114 WP_014937089.1 hypothetical protein -
  KU536_RS00060 (KU536_00060) - 11929..12189 (+) 261 WP_014937088.1 hypothetical protein -
  KU536_RS00065 (KU536_00065) - 12199..12696 (+) 498 WP_001065267.1 glutathione peroxidase -
  KU536_RS00070 (KU536_00070) - 12804..12896 (-) 93 WP_031774855.1 hypothetical protein -
  KU536_RS00075 (KU536_00075) - 13087..14967 (+) 1881 WP_000775147.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
  KU536_RS00080 (KU536_00080) - 15033..15641 (+) 609 WP_001057046.1 NAD(P)-binding protein -
  KU536_RS00085 (KU536_00085) - 15714..15827 (+) 114 WP_001807931.1 hypothetical protein -
  KU536_RS00090 (KU536_00090) - 16130..17500 (+) 1371 WP_001083496.1 CitMHS family transporter -
  KU536_RS00095 (KU536_00095) nrdD 17747..19597 (+) 1851 WP_001071718.1 anaerobic ribonucleoside-triphosphate reductase -
  KU536_RS00100 (KU536_00100) nrdG 19594..20130 (+) 537 WP_000173332.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  KU536_RS00105 (KU536_00105) - 20229..20339 (+) 111 WP_001826007.1 hypothetical protein -
  KU536_RS00110 (KU536_00110) - 20355..20516 (-) 162 WP_001807465.1 hypothetical protein -
  KU536_RS00115 (KU536_00115) - 20648..22270 (+) 1623 WP_000711870.1 BCCT family transporter -
  KU536_RS00120 (KU536_00120) cudC 22439..23002 (-) 564 WP_000198596.1 choline uptake/conversion transcriptional regulator CudC -
  KU536_RS00125 (KU536_00125) - 23091..23186 (-) 96 WP_001789908.1 hypothetical protein -
  KU536_RS00130 (KU536_00130) betB 23255..24745 (+) 1491 WP_000421708.1 betaine-aldehyde dehydrogenase -
  KU536_RS00135 (KU536_00135) betA 25006..26715 (+) 1710 WP_000066527.1 choline dehydrogenase -
  KU536_RS00140 (KU536_00140) - 26993..27205 (+) 213 WP_000011688.1 sterile alpha motif-like domain-containing protein -
  KU536_RS00145 (KU536_00145) - 27485..27927 (+) 443 Protein_28 antibiotic biosynthesis monooxygenase family protein -
  KU536_RS00150 (KU536_00150) mbcS 28121..29719 (+) 1599 WP_001172340.1 acyl-CoA synthetase MbcS -
  KU536_RS00155 (KU536_00155) - 29779..30110 (-) 332 Protein_30 hypothetical protein -
  KU536_RS00160 (KU536_00160) lqo 30406..31902 (+) 1497 WP_001130051.1 L-lactate dehydrogenase (quinone) -
  KU536_RS00165 (KU536_00165) - 32097..32987 (-) 891 WP_001031407.1 fructose bisphosphate aldolase -
  KU536_RS00170 (KU536_00170) - 33110..33526 (-) 417 WP_001237624.1 hypothetical protein -
  KU536_RS00175 (KU536_00175) - 33780..35117 (+) 1338 WP_000030076.1 aspartate aminotransferase family protein -
  KU536_RS00180 (KU536_00180) - 35192..35476 (+) 285 WP_000134547.1 hypothetical protein -
  KU536_RS00185 (KU536_00185) - 35627..35947 (+) 321 WP_000805733.1 DUF961 family protein -
  KU536_RS00190 (KU536_00190) - 35961..36263 (+) 303 WP_000386891.1 hypothetical protein -
  KU536_RS00195 (KU536_00195) - 36438..37529 (+) 1092 WP_000172938.1 replication initiation factor domain-containing protein -
  KU536_RS00200 (KU536_00200) - 37590..38645 (+) 1056 WP_225805657.1 conjugal transfer protein -
  KU536_RS00205 (KU536_00205) - 38650..38910 (+) 261 WP_000015642.1 TcpD family membrane protein -
  KU536_RS00210 (KU536_00210) - 38922..39305 (+) 384 WP_000358146.1 TcpE family conjugal transfer membrane protein -
  KU536_RS00215 (KU536_00215) - 39340..41835 (+) 2496 WP_001049264.1 ATP-binding protein -
  KU536_RS00220 (KU536_00220) - 41889..43247 (+) 1359 WP_001251198.1 FtsK/SpoIIIE domain-containing protein -
  KU536_RS00225 (KU536_00225) - 43252..45099 (+) 1848 WP_225805656.1 CD3337/EF1877 family mobilome membrane protein -
  KU536_RS00230 (KU536_00230) - 45089..46135 (+) 1047 WP_000247474.1 CHAP domain-containing protein -
  KU536_RS00235 (KU536_00235) - 46142..46732 (+) 591 WP_000810444.1 hypothetical protein -
  KU536_RS00240 (KU536_00240) - 46788..47144 (+) 357 WP_001255379.1 cystatin-like fold lipoprotein -
  KU536_RS00245 (KU536_00245) - 47253..47756 (+) 504 WP_000746374.1 transposase -
  KU536_RS00250 (KU536_00250) - 47785..48273 (+) 489 WP_164022204.1 IS30 family transposase -
  KU536_RS00255 (KU536_00255) - 48554..50002 (-) 1449 WP_000534420.1 APC family permease -
  KU536_RS00260 (KU536_00260) - 50689..51648 (+) 960 WP_000846637.1 L-lactate dehydrogenase -
  KU536_RS00265 (KU536_00265) budA 51925..52629 (+) 705 WP_000186114.1 acetolactate decarboxylase -
  KU536_RS00270 (KU536_00270) - 52715..53575 (-) 861 WP_000953575.1 oxidoreductase -
  KU536_RS00275 (KU536_00275) panB 53648..54466 (+) 819 WP_000860047.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  KU536_RS00280 (KU536_00280) panC 54459..55310 (+) 852 WP_000163736.1 pantoate--beta-alanine ligase -
  KU536_RS00285 (KU536_00285) panD 55312..55695 (+) 384 WP_000621530.1 aspartate 1-decarboxylase -
  KU536_RS00290 (KU536_00290) - 55824..57506 (-) 1683 WP_001071573.1 CocE/NonD family hydrolase -
  KU536_RS00295 (KU536_00295) - 57563..57671 (+) 109 Protein_58 hypothetical protein -
  KU536_RS00300 (KU536_00300) - 57649..58236 (+) 588 WP_000151119.1 TetR/AcrR family transcriptional regulator -
  KU536_RS00305 (KU536_00305) - 58317..58766 (-) 450 WP_000125707.1 VOC family protein -
  KU536_RS00310 (KU536_00310) - 59120..59842 (+) 723 WP_000606210.1 epoxyqueuosine reductase QueH -
  KU536_RS00315 (KU536_00315) - 60028..60303 (-) 276 WP_001051114.1 hypothetical protein -
  KU536_RS00320 (KU536_00320) - 60458..61522 (-) 1065 WP_000277417.1 quinone-dependent dihydroorotate dehydrogenase -
  KU536_RS00325 (KU536_00325) - 61740..62606 (+) 867 WP_001005518.1 fructosamine kinase family protein -
  KU536_RS00330 (KU536_00330) - 62947..63225 (+) 279 WP_001825991.1 TIGR04197 family type VII secretion effector -
  KU536_RS00335 (KU536_00335) - 63240..63608 (+) 369 WP_000066365.1 hypothetical protein -
  KU536_RS00340 (KU536_00340) - 63596..63892 (+) 297 WP_000447707.1 DUF4176 domain-containing protein -
  KU536_RS00345 (KU536_00345) - 64228..65334 (+) 1107 WP_001163753.1 NAD(P)/FAD-dependent oxidoreductase -
  KU536_RS00350 (KU536_00350) - 65328..66668 (+) 1341 WP_000895202.1 nucleoside recognition domain-containing protein -

Sequence


Protein


Download         Length: 295 a.a.        Molecular weight: 34045.32 Da        Isoelectric Point: 5.8962

>NTDB_id=585273 KU536_RS00040 WP_000143420.1 7018..7905(+) (braS) [Staphylococcus aureus strain 200]
MTFLKSITQEIAIVIVIFALFGLMFYLYHLPLEAYLLALGVILLLLLIFIGIKYLSFVKTISQQQQIENLENALYQLKNE
QIEYKNDVESYFLTWVHQMKTPITAAQLLLERDEPNVVNRVRQEVIQIDNYTSLALSYLKLLNETSDISVTKISINNIIR
PIIMKYSIQFIDQKTKIHYEPCHHEVLTDVRWTSLMIEQLINNALKYARGKDIWIEFDEQSNQLYVKDNGIGISEADLPK
IFDKGYSGYNGQRQSNSSGIGLFIVKQISTHTNHPVSVVSKQNEGTTFTIQFPDE

Nucleotide


Download         Length: 888 bp        

>NTDB_id=585273 KU536_RS00040 WP_000143420.1 7018..7905(+) (braS) [Staphylococcus aureus strain 200]
ATGACCTTTCTTAAAAGTATTACTCAGGAAATAGCAATAGTCATAGTTATTTTTGCTTTATTTGGCTTAATGTTTTACCT
GTATCATTTGCCATTAGAAGCATATTTACTAGCACTTGGCGTTATTTTATTATTATTACTCATATTTATAGGTATTAAAT
ATTTAAGTTTTGTAAAAACTATAAGCCAACAACAACAAATTGAAAACTTAGAAAATGCGTTGTATCAGCTTAAAAATGAA
CAAATTGAATATAAAAATGATGTAGAGAGCTACTTTTTAACATGGGTACATCAAATGAAAACACCCATTACTGCAGCACA
ACTGTTACTTGAAAGAGATGAGCCTAATGTTGTGAATCGTGTTCGTCAAGAGGTTATTCAAATTGATAACTATACAAGTT
TAGCACTTAGTTATTTAAAGTTATTAAATGAAACTTCTGATATTTCTGTCACTAAAATTTCGATTAACAATATCATTCGC
CCAATTATTATGAAATATTCAATACAGTTTATTGATCAAAAAACAAAAATCCATTATGAACCTTGTCATCACGAAGTATT
AACTGACGTTAGATGGACCTCTTTAATGATAGAACAATTAATAAATAATGCACTTAAGTATGCGAGAGGTAAAGATATAT
GGATTGAATTTGATGAGCAATCCAATCAATTATACGTAAAAGATAATGGTATCGGTATTAGTGAAGCGGACTTGCCTAAA
ATATTTGATAAGGGCTATTCAGGTTATAATGGCCAGCGGCAAAGTAACTCAAGTGGGATTGGTTTATTTATCGTAAAACA
AATTTCAACTCACACAAACCATCCTGTTTCAGTCGTATCTAAACAAAATGAGGGTACAACATTTACGATTCAATTTCCAG
ATGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2S6DP21

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

99.322

100

0.993