Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MYL27_RS15350 Genome accession   NZ_CP095836
Coordinates   3063719..3065146 (+) Length   475 a.a.
NCBI ID   WP_275349293.1    Uniprot ID   -
Organism   Escherichia coli strain EC31     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3058719..3070146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYL27_RS15310 (MYL27_15225) yeeW 3058903..3059097 (+) 195 WP_000988599.1 DUF5983 family protein -
  MYL27_RS15315 (MYL27_15230) - 3059131..3059223 (+) 93 Protein_2982 DUF957 domain-containing protein -
  MYL27_RS15320 - 3059512..3059649 (-) 138 Protein_2983 transposase domain-containing protein -
  MYL27_RS15325 - 3059712..3059894 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  MYL27_RS15330 (MYL27_15245) tmaR 3059995..3060324 (-) 330 WP_000450409.1 DUF496 family protein -
  MYL27_RS15335 (MYL27_15250) yeeA 3060496..3061554 (-) 1059 WP_001200905.1 FUSC family protein -
  MYL27_RS15340 (MYL27_15255) sbmC 3061752..3062225 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  MYL27_RS15345 (MYL27_15260) dacD 3062344..3063510 (-) 1167 WP_001369224.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  MYL27_RS15350 (MYL27_15265) sbcB 3063719..3065146 (+) 1428 WP_275349293.1 exodeoxyribonuclease I Machinery gene
  MYL27_RS15355 (MYL27_15270) tsuB 3065189..3065416 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  MYL27_RS15360 (MYL27_15275) tsuA 3065430..3066488 (-) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  MYL27_RS15365 (MYL27_15280) plaP 3066667..3068025 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  MYL27_RS15370 (MYL27_15285) yoeI 3068015..3068077 (-) 63 WP_010723108.1 membrane protein YoeI -
  MYL27_RS15375 (MYL27_15290) yeeY 3068292..3069221 (-) 930 WP_052914073.1 LysR substrate-binding domain-containing protein -
  MYL27_RS15380 (MYL27_15295) yeeZ 3069267..3070091 (-) 825 WP_000754755.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54543.84 Da        Isoelectric Point: 5.4720

>NTDB_id=585224 MYL27_RS15350 WP_275349293.1 3063719..3065146(+) (sbcB) [Escherichia coli strain EC31]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHISGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=585224 MYL27_RS15350 WP_275349293.1 3063719..3065146(+) (sbcB) [Escherichia coli strain EC31]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACATTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579