Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   KU509_RS00090 Genome accession   NZ_CP077917
Coordinates   12908..13354 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 280     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 7908..18354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU509_RS00060 (KU509_00060) gcvPA 8834..10180 (-) 1347 WP_000019692.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  KU509_RS00065 (KU509_00065) gcvT 10200..11291 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  KU509_RS00070 (KU509_00070) - 11450..11974 (-) 525 WP_001015120.1 shikimate kinase -
  KU509_RS00075 (KU509_00075) - 11964..12110 (-) 147 WP_001792109.1 hypothetical protein -
  KU509_RS00080 (KU509_00080) comGF 12207..12704 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  KU509_RS00085 (KU509_00085) comGE 12622..12921 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  KU509_RS00090 (KU509_00090) comGD 12908..13354 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  KU509_RS00095 (KU509_00095) comGC 13332..13643 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  KU509_RS00100 (KU509_00100) comGB 13657..14727 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  KU509_RS00105 (KU509_00105) comGA 14699..15673 (-) 975 WP_000697217.1 competence type IV pilus ATPase ComGA Machinery gene
  KU509_RS00110 (KU509_00110) - 15725..16348 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  KU509_RS00115 (KU509_00115) - 16345..16674 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  KU509_RS00120 (KU509_00120) - 16674..17660 (-) 987 WP_225806189.1 ROK family glucokinase -
  KU509_RS00125 (KU509_00125) - 17657..17860 (-) 204 WP_064626802.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=585020 KU509_RS00090 WP_001788899.1 12908..13354(-) (comGD) [Staphylococcus aureus strain 280]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=585020 KU509_RS00090 WP_001788899.1 12908..13354(-) (comGD) [Staphylococcus aureus strain 280]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1