Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MYL38_RS16380 Genome accession   NZ_CP095820
Coordinates   3287762..3289189 (+) Length   475 a.a.
NCBI ID   WP_000980608.1    Uniprot ID   -
Organism   Escherichia coli strain Jnd12     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3282762..3294189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYL38_RS16355 (MYL38_16280) - 3283803..3283937 (+) 135 WP_001297944.1 EutP/PduV family microcompartment system protein -
  MYL38_RS16360 (MYL38_16285) tmaR 3284038..3284367 (-) 330 WP_000450409.1 DUF496 family protein -
  MYL38_RS16365 (MYL38_16290) yeeA 3284539..3285597 (-) 1059 WP_050867716.1 FUSC family protein -
  MYL38_RS16370 (MYL38_16295) sbmC 3285795..3286268 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  MYL38_RS16375 (MYL38_16300) dacD 3286387..3287553 (-) 1167 WP_050867714.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  MYL38_RS16380 (MYL38_16305) sbcB 3287762..3289189 (+) 1428 WP_000980608.1 exodeoxyribonuclease I Machinery gene
  MYL38_RS16385 (MYL38_16310) tsuB 3289232..3289459 (-) 228 WP_050867712.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  MYL38_RS16390 (MYL38_16315) - 3289473..3290222 (-) 750 Protein_3196 YeeE/YedE thiosulfate transporter family protein -
  MYL38_RS16400 (MYL38_16325) - 3291553..3291867 (-) 315 Protein_3198 YeeE/YedE thiosulfate transporter family protein -
  MYL38_RS16405 (MYL38_16330) plaP 3292046..3293404 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  MYL38_RS16410 (MYL38_16335) yoeI 3293394..3293456 (-) 63 WP_010723108.1 membrane protein YoeI -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54457.75 Da        Isoelectric Point: 5.6070

>NTDB_id=584970 MYL38_RS16380 WP_000980608.1 3287762..3289189(+) (sbcB) [Escherichia coli strain Jnd12]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=584970 MYL38_RS16380 WP_000980608.1 3287762..3289189(+) (sbcB) [Escherichia coli strain Jnd12]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGGATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581