Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   MYL38_RS07085 Genome accession   NZ_CP095820
Coordinates   1483664..1484269 (+) Length   201 a.a.
NCBI ID   WP_001195017.1    Uniprot ID   -
Organism   Escherichia coli strain Jnd12     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1478664..1489269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYL38_RS07055 (MYL38_07045) rsmS 1479369..1479530 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  MYL38_RS07060 (MYL38_07050) priC 1479544..1480071 (-) 528 WP_000844858.1 primosomal replication protein N'' -
  MYL38_RS07065 (MYL38_07055) ybaN 1480141..1480518 (+) 378 WP_001188905.1 DUF454 family protein -
  MYL38_RS07070 (MYL38_07060) apt 1480671..1481222 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  MYL38_RS07075 (MYL38_07065) dnaX 1481351..1483282 (+) 1932 WP_000122011.1 DNA polymerase III subunit gamma/tau -
  MYL38_RS07080 (MYL38_07070) ybaB 1483335..1483664 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  MYL38_RS07085 (MYL38_07075) recR 1483664..1484269 (+) 606 WP_001195017.1 recombination mediator RecR Machinery gene
  MYL38_RS07090 (MYL38_07080) htpG 1484379..1486253 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  MYL38_RS07095 (MYL38_07085) adk 1486434..1487078 (+) 645 WP_001220233.1 adenylate kinase -
  MYL38_RS07100 (MYL38_07090) hemH 1487210..1488172 (+) 963 WP_001250105.1 ferrochelatase -
  MYL38_RS07105 (MYL38_07095) aes 1488169..1489128 (-) 960 WP_000801797.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21972.01 Da        Isoelectric Point: 5.0751

>NTDB_id=584952 MYL38_RS07085 WP_001195017.1 1483664..1484269(+) (recR) [Escherichia coli strain Jnd12]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEHEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=584952 MYL38_RS07085 WP_001195017.1 1483664..1484269(+) (recR) [Escherichia coli strain Jnd12]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACACGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.005

0.438