Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   KU501_RS00170 Genome accession   NZ_CP077911
Coordinates   43800..45149 (-) Length   449 a.a.
NCBI ID   WP_000806249.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 318     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 38800..50149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU501_RS00145 (KU501_00145) - 40179..40400 (-) 222 WP_001015148.1 hypothetical protein -
  KU501_RS00150 (KU501_00150) - 40415..40918 (-) 504 WP_000849084.1 DUF1643 domain-containing protein -
  KU501_RS00155 (KU501_00155) - 40934..41248 (-) 315 WP_000703986.1 DUF960 family protein -
  KU501_RS00160 (KU501_00160) - 41335..41685 (-) 351 WP_000859154.1 SAUGI family uracil-DNA glycosylase inhibitor -
  KU501_RS00165 (KU501_00165) ccrB 42151..43779 (-) 1629 WP_001186594.1 cassette chromosome recombinase CcrB Machinery gene
  KU501_RS00170 (KU501_00170) ccrA 43800..45149 (-) 1350 WP_000806249.1 cassette chromosome recombinase CcrA Machinery gene
  KU501_RS00175 (KU501_00175) - 45340..45618 (-) 279 WP_001100996.1 hypothetical protein -
  KU501_RS00180 (KU501_00180) cch1 45689..47476 (-) 1788 WP_111142315.1 cassette chromosome replicative helicase -
  KU501_RS00185 (KU501_00185) - 47476..47745 (-) 270 WP_000875688.1 hypothetical protein -
  KU501_RS00190 (KU501_00190) - 47900..49459 (-) 1560 WP_000172880.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52276.93 Da        Isoelectric Point: 10.0235

>NTDB_id=584892 KU501_RS00170 WP_000806249.1 43800..45149(-) (ccrA) [Staphylococcus aureus strain 318]
MKQAIGYLRQSTTKQQSLVAQKQAIKTLAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSIHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYTYR
NGTFTINQDEAPTVKAIFHYYLQDYGYKKIAQYLETDDKCINRKPYQVRAIITNPNYCGRVINQYGQYDNMFPSIVSTSI
YEQAQAIRSQKHTKRTPSSNQLKQKIKCPCCGSTLTNMTIRKKNHTLRYYVCPQNLNASRFVCEFKGINAQALEASVLST
CQDFFQNQQLYSKINRTIQQQLKRQRDIETKTTLNHEQLIEKLANGKIDAETFREQTQSLHQQSKPISSISAYQIQRAFQ
NIIQQRFTLNMLYPYIDQIHITKKKMLVGIYFKNEPLNIVNQKTQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=584892 KU501_RS00170 WP_000806249.1 43800..45149(-) (ccrA) [Staphylococcus aureus strain 318]
ATGAAACAAGCAATAGGTTACTTACGTCAGAGCACTACAAAGCAACAATCACTAGTAGCACAGAAACAAGCCATCAAGAC
ATTAGCTGAAAAACACAATATTCAACACATCACATTTTATAGCGATAAGCAATCAGGACGCACTGATAAGCGGAATGGTT
ATCAACAAATTACTGAACTGATTCAACAAGGACAATGTGACGTACTATGTTGTTATCGCTTGAATCGACTACATCGTAAT
TTGAAAAATGCATTAAAACTTATGAAACTGTGTCAAAAATATCATGTTCATATTCTAAGTATTCATGATGGCTATTTTGA
TATGGATAAAGCGTTTGATCGCCTAAAGCTCAATATATTCATAAGCCTCGCAGAATTAGAGTCCGATAATATTGGTGAAC
AAGTCAAAAATGGCCTTCGAGAAAAAGCAAAACAAGGTAAACTGATCACAACCCATGCACCATTTGGTTATACCTATCGC
AATGGCACATTCACAATTAATCAAGATGAAGCACCAACAGTTAAGGCAATATTCCATTACTACCTACAAGACTATGGTTA
TAAGAAAATTGCGCAATACCTAGAAACAGATGATAAATGTATTAATCGTAAACCTTACCAAGTACGCGCTATTATAACGA
ATCCTAATTATTGTGGTCGCGTTATCAATCAATATGGACAATATGACAACATGTTCCCATCTATTGTTTCGACCAGTATA
TACGAACAAGCTCAAGCAATAAGGTCACAAAAACATACCAAGCGGACTCCATCATCTAATCAACTCAAACAAAAAATCAA
ATGTCCGTGTTGTGGCTCAACACTCACAAATATGACAATTAGAAAAAAGAACCATACATTACGTTATTACGTCTGTCCTC
AAAATTTGAATGCATCTCGTTTTGTCTGTGAATTCAAGGGAATCAACGCACAAGCATTAGAAGCAAGTGTCTTATCTACA
TGTCAGGATTTCTTTCAGAACCAACAGCTGTATTCAAAAATTAACCGAACAATTCAACAACAACTCAAAAGACAAAGAGA
CATAGAAACTAAAACTACACTCAATCACGAACAGCTGATAGAAAAATTGGCCAACGGCAAAATTGATGCAGAAACGTTCA
GAGAACAAACGCAATCATTACATCAACAATCAAAACCTATATCATCAATCAGTGCGTATCAAATTCAAAGAGCGTTTCAA
AACATCATTCAACAACGTTTCACGCTAAACATGTTATACCCTTATATTGATCAAATTCATATCACAAAAAAGAAAATGCT
TGTTGGCATTTATTTCAAAAATGAACCCTTAAATATCGTCAATCAAAAAACGCAATCATCGATTGCTTAA

Domains

Predicted by InterproScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)

Recombinase (Recombinase)

(169-250)

Resolvase, N terminal domain (Resolvase)

(4-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

86.414

100

0.864
  ccrA Staphylococcus aureus N315

76.837

100

0.768