Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   KU505_RS08080 Genome accession   NZ_CP077899
Coordinates   1699416..1699862 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 324     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1694416..1704862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU505_RS08050 (KU505_07995) gcvPA 1695342..1696688 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  KU505_RS08055 (KU505_08000) gcvT 1696708..1697799 (-) 1092 WP_000093340.1 glycine cleavage system aminomethyltransferase GcvT -
  KU505_RS08060 (KU505_08005) - 1697958..1698482 (-) 525 WP_001015120.1 shikimate kinase -
  KU505_RS08065 (KU505_08010) - 1698472..1698618 (-) 147 WP_001789879.1 hypothetical protein -
  KU505_RS08070 (KU505_08015) comGF 1698715..1699212 (-) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  KU505_RS08075 (KU505_08020) comGE 1699130..1699429 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  KU505_RS08080 (KU505_08025) comGD 1699416..1699862 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  KU505_RS08085 (KU505_08030) comGC 1699840..1700151 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  KU505_RS08090 (KU505_08035) comGB 1700165..1701235 (-) 1071 WP_000776414.1 competence type IV pilus assembly protein ComGB Machinery gene
  KU505_RS08095 (KU505_08040) comGA 1701207..1702181 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  KU505_RS08100 (KU505_08045) - 1702233..1702856 (-) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  KU505_RS08105 (KU505_08050) - 1702853..1703182 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  KU505_RS08110 (KU505_08055) - 1703182..1704168 (-) 987 WP_000161307.1 ROK family glucokinase -
  KU505_RS08115 (KU505_08060) - 1704165..1704368 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=584827 KU505_RS08080 WP_001796473.1 1699416..1699862(-) (comGD) [Staphylococcus aureus strain 324]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=584827 KU505_RS08080 WP_001796473.1 1699416..1699862(-) (comGD) [Staphylococcus aureus strain 324]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
CATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993