Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I872_RS09415 Genome accession   NC_021175
Coordinates   1908341..1909705 (-) Length   454 a.a.
NCBI ID   WP_080638495.1    Uniprot ID   -
Organism   Streptococcus cristatus AS 1.3089     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1903341..1914705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS09390 (I872_09405) - 1903540..1905021 (+) 1482 WP_015605857.1 M protein trans-acting positive regulator PRD domain-containing protein -
  I872_RS09395 (I872_09410) - 1905183..1905941 (-) 759 WP_015605858.1 ABC transporter ATP-binding protein -
  I872_RS09400 (I872_09415) - 1905938..1906804 (-) 867 WP_015605859.1 ABC transporter permease -
  I872_RS09405 (I872_09420) - 1906907..1907401 (-) 495 WP_005591608.1 beta-class carbonic anhydrase -
  I872_RS09410 (I872_09425) - 1907570..1908265 (-) 696 WP_005591607.1 TIGR00266 family protein -
  I872_RS09415 (I872_09430) radA 1908341..1909705 (-) 1365 WP_080638495.1 DNA repair protein RadA Machinery gene
  I872_RS09420 (I872_09435) - 1909716..1910273 (-) 558 WP_015605861.1 histidine phosphatase family protein -
  I872_RS09425 (I872_09440) - 1910233..1910676 (-) 444 WP_015605862.1 dUTP diphosphatase -
  I872_RS09430 (I872_09445) - 1910762..1911211 (-) 450 WP_015605863.1 8-oxo-dGTP diphosphatase -
  I872_RS09435 (I872_09450) - 1911467..1912156 (-) 690 WP_015605864.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  I872_RS09440 (I872_09455) - 1912326..1913069 (-) 744 WP_015605865.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  I872_RS09445 (I872_09460) prmA 1913070..1914023 (-) 954 WP_015605866.1 50S ribosomal protein L11 methyltransferase -
  I872_RS09450 (I872_09465) - 1914167..1914637 (-) 471 WP_015605867.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49717.09 Da        Isoelectric Point: 6.2724

>NTDB_id=58479 I872_RS09415 WP_080638495.1 1908341..1909705(-) (radA) [Streptococcus cristatus AS 1.3089]
MIAKKKTTFVCQNCEYHSPKYLGRCPNCGSWSSFVEEVETTEVKHARVSLTGEKTRPMKLAEVTSIDVNRTKTDMDEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHQGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQNIRTEI
EKIKPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEGE
RQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNA
KRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEI
RRVNRIEQRINEAAKLGFTKIYAPKNSLNGLKVPNNIQVIGVTTIGEVLKKVFA

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=58479 I872_RS09415 WP_080638495.1 1908341..1909705(-) (radA) [Streptococcus cristatus AS 1.3089]
ATCATCGCTAAGAAAAAGACGACCTTTGTCTGTCAAAATTGTGAATACCATTCGCCTAAGTACCTAGGGCGCTGTCCCAA
CTGCGGCTCCTGGTCTTCTTTTGTTGAGGAAGTAGAGACCACTGAGGTCAAGCATGCCCGTGTTTCCTTGACGGGCGAAA
AGACTCGGCCTATGAAGCTGGCTGAGGTCACTTCGATTGATGTCAACCGGACCAAGACGGACATGGACGAGTTCAATCGT
GTGCTGGGTGGTGGCGTAGTGCCTGGCAGTCTGGTCCTGATTGGCGGGGATCCTGGTATCGGGAAGTCCACCCTGCTTCT
ACAGGTATCCACCCAGCTTTCTCATCAGGGCACCGTCCTTTATGTCAGCGGGGAGGAATCAGCTGAGCAGATCAAGCTGC
GGGCGGAACGCCTCGGTGATATTGATAGTGAATTTTATCTCTACGCCGAGACCAATATGCAAAACATCCGCACGGAGATT
GAAAAAATCAAGCCAGATTTTCTGATTATTGACTCCATTCAGACAGTGATGTCGCCGGAAATTTCCAGTGTTCAAGGTTC
TGTTTCTCAGGTCCGCGAGGTGACAGCTGAGCTCATGCAGCTGGCCAAGACCAATAATATCGCGACCTTTATCGTTGGTC
ACATGACCAAGGAAGGAACCTTAGCTGGCCCCCGGACACTAGAGCACATGGTGGACACAGTGCTTTATTTTGAGGGTGAA
CGCCAGCACACTTTCCGTATCTTGAGAGCAGTCAAGAACCGCTTTGGCTCGACCAATGAGATTGGTATCTTCGAAATGCA
GTCTGGCGGGCTAGTCGAGGTGCTCAATCCAAGCCAAGTCTTTCTGGAAGAGCGGCTGGACGGTGCGACAGGCTCCTCCA
TCGTTGTGACCATGGAAGGAACGCGGCCGATTTTAGCAGAGGTACAGGCTTTGGTGACACCGACCATGTTCGGCAATGCC
AAGCGAACCACGACTGGACTGGACTTTAACCGAGCCAGCCTCATCATGGCAGTTCTGGAAAAGAGGGCAGGACTCCTCCT
GCAAAATCAAGATGCCTACCTCAAGTCAGCTGGCGGCGTCAAGCTAGATGAGCCAGCGATTGATTTGGCAGTAGCAGTAG
CCATTGCTTCCAGCTACAAGGATCTGCCTACAAATCCTCAAGAATGCTTTATCGGCGAAATTGGCCTGACTGGTGAAATT
CGTCGGGTTAATCGCATCGAGCAGCGCATTAACGAAGCAGCAAAACTGGGCTTCACCAAGATTTATGCTCCCAAAAACTC
TCTGAATGGCCTCAAGGTTCCAAACAATATCCAAGTCATCGGTGTGACGACGATTGGGGAAGTCTTGAAAAAAGTCTTTG
CTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-219)

Subunit ChlI of Mg-chelatase (ChlI)

(361-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

92.053

99.78

0.919
  radA Streptococcus pneumoniae Rx1

91.832

99.78

0.916
  radA Streptococcus pneumoniae D39

91.832

99.78

0.916
  radA Streptococcus pneumoniae R6

91.832

99.78

0.916
  radA Streptococcus pneumoniae TIGR4

91.832

99.78

0.916
  radA Streptococcus mitis SK321

91.832

99.78

0.916
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

99.78

0.623

Multiple sequence alignment