Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MYL46_RS08990 Genome accession   NZ_CP095801
Coordinates   1897915..1899342 (-) Length   475 a.a.
NCBI ID   WP_001402309.1    Uniprot ID   -
Organism   Escherichia coli strain E166     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1892915..1904342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYL46_RS08960 (MYL46_08945) yeeZ 1892970..1893794 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  MYL46_RS08965 (MYL46_08950) yeeY 1893840..1894769 (+) 930 WP_212406990.1 LysR substrate-binding domain-containing protein -
  MYL46_RS08970 (MYL46_08955) yoeI 1894984..1895046 (+) 63 WP_010723108.1 membrane protein YoeI -
  MYL46_RS08975 (MYL46_08960) plaP 1895036..1896394 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  MYL46_RS08980 (MYL46_08965) tsuA 1896573..1897631 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  MYL46_RS08985 (MYL46_08970) tsuB 1897645..1897872 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  MYL46_RS08990 (MYL46_08975) sbcB 1897915..1899342 (-) 1428 WP_001402309.1 exodeoxyribonuclease I Machinery gene
  MYL46_RS08995 (MYL46_08980) dacD 1899551..1900717 (+) 1167 WP_000830150.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  MYL46_RS09000 (MYL46_08985) sbmC 1900836..1901309 (+) 474 WP_097501048.1 DNA gyrase inhibitor SbmC -
  MYL46_RS09005 (MYL46_08990) yeeA 1901507..1902565 (+) 1059 WP_001200905.1 FUSC family protein -
  MYL46_RS09010 (MYL46_08995) tmaR 1902737..1903066 (+) 330 WP_000450409.1 DUF496 family protein -
  MYL46_RS09015 (MYL46_09000) - 1903167..1903349 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  MYL46_RS09020 (MYL46_09005) - 1903412..1903549 (+) 138 Protein_1764 transposase domain-containing protein -
  MYL46_RS09025 (MYL46_09010) - 1903838..1903930 (-) 93 Protein_1765 DUF957 domain-containing protein -
  MYL46_RS09030 (MYL46_09015) yeeW 1903964..1904158 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.6102

>NTDB_id=584704 MYL46_RS08990 WP_001402309.1 1897915..1899342(-) (sbcB) [Escherichia coli strain E166]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=584704 MYL46_RS08990 WP_001402309.1 1897915..1899342(-) (sbcB) [Escherichia coli strain E166]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCAATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579