Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   MYL47_RS18585 Genome accession   NZ_CP095798
Coordinates   3785255..3785770 (-) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain CT282     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3780255..3790770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYL47_RS18560 (MYL47_18495) ygaZ 3780654..3781391 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  MYL47_RS18565 (MYL47_18500) ygaH 3781381..3781716 (+) 336 WP_000119759.1 L-valine transporter subunit YgaH -
  MYL47_RS18570 (MYL47_18505) emrR 3781807..3782337 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  MYL47_RS18575 (MYL47_18510) emrA 3782464..3783636 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  MYL47_RS18580 (MYL47_18515) emrB 3783653..3785191 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  MYL47_RS18585 (MYL47_18520) luxS 3785255..3785770 (-) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  MYL47_RS18590 (MYL47_18525) gshA 3785920..3787476 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  MYL47_RS18595 (MYL47_18530) yqaA 3787549..3787977 (-) 429 WP_001287454.1 YqaA family protein -
  MYL47_RS18600 (MYL47_18535) yqaB 3787974..3788540 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  MYL47_RS18630 (MYL47_18565) csrA 3789865..3790050 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=584641 MYL47_RS18585 WP_001130208.1 3785255..3785770(-) (luxS) [Escherichia coli strain CT282]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=584641 MYL47_RS18585 WP_001130208.1 3785255..3785770(-) (luxS) [Escherichia coli strain CT282]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737