Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   MYL47_RS18320 Genome accession   NZ_CP095798
Coordinates   3738081..3738818 (+) Length   245 a.a.
NCBI ID   WP_000197684.1    Uniprot ID   -
Organism   Escherichia coli strain CT282     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3733081..3743818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYL47_RS18305 (MYL47_18240) clpC 3733535..3736108 (-) 2574 WP_001317994.1 ATP-dependent chaperone ClpB Regulator
  MYL47_RS18310 (MYL47_18245) yfiH 3736238..3736969 (-) 732 WP_000040126.1 purine nucleoside phosphorylase YfiH -
  MYL47_RS18315 (MYL47_18250) rluD 3736966..3737946 (-) 981 WP_000079108.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  MYL47_RS18320 (MYL47_18255) comL 3738081..3738818 (+) 738 WP_000197684.1 outer membrane protein assembly factor BamD Machinery gene
  MYL47_RS18325 (MYL47_18260) insG 3738922..3740269 (+) 1348 Protein_3565 IS4-like element IS4 family transposase -
  MYL47_RS18330 (MYL47_18265) raiA 3740530..3740871 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  MYL47_RS18335 (MYL47_18270) pheL 3740975..3741022 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  MYL47_RS18340 (MYL47_18275) pheA 3741121..3742281 (+) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  MYL47_RS18345 (MYL47_18280) tyrA 3742324..3743445 (-) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27811.36 Da        Isoelectric Point: 6.4874

>NTDB_id=584640 MYL47_RS18320 WP_000197684.1 3738081..3738818(+) (comL) [Escherichia coli strain CT282]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQLNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=584640 MYL47_RS18320 WP_000197684.1 3738081..3738818(+) (comL) [Escherichia coli strain CT282]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGTTGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

39.167

97.959

0.384