Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   MYL30_RS17870 Genome accession   NZ_CP095795
Coordinates   3613373..3613978 (-) Length   201 a.a.
NCBI ID   WP_001195017.1    Uniprot ID   -
Organism   Escherichia coli strain CT265     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3608373..3618978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYL30_RS17850 (MYL30_17755) aes 3608514..3609473 (+) 960 WP_000801797.1 acetyl esterase -
  MYL30_RS17855 (MYL30_17760) hemH 3609470..3610432 (-) 963 WP_001250105.1 ferrochelatase -
  MYL30_RS17860 (MYL30_17765) adk 3610564..3611208 (-) 645 WP_001220233.1 adenylate kinase -
  MYL30_RS17865 (MYL30_17770) htpG 3611389..3613263 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  MYL30_RS17870 (MYL30_17775) recR 3613373..3613978 (-) 606 WP_001195017.1 recombination mediator RecR Machinery gene
  MYL30_RS17875 (MYL30_17780) ybaB 3613978..3614307 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  MYL30_RS17880 (MYL30_17785) dnaX 3614360..3616291 (-) 1932 WP_000122011.1 DNA polymerase III subunit gamma/tau -
  MYL30_RS17885 (MYL30_17790) apt 3616420..3616971 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  MYL30_RS17890 (MYL30_17795) ybaN 3617124..3617501 (-) 378 WP_001188905.1 DUF454 family protein -
  MYL30_RS17895 (MYL30_17800) priC 3617571..3618098 (+) 528 WP_000844858.1 primosomal replication protein N'' -
  MYL30_RS17900 (MYL30_17805) rsmS 3618112..3618273 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21972.01 Da        Isoelectric Point: 5.0751

>NTDB_id=584556 MYL30_RS17870 WP_001195017.1 3613373..3613978(-) (recR) [Escherichia coli strain CT265]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEHEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=584556 MYL30_RS17870 WP_001195017.1 3613373..3613978(-) (recR) [Escherichia coli strain CT265]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACACGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.005

0.438