Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MYL30_RS15155 Genome accession   NZ_CP095795
Coordinates   3067156..3068583 (+) Length   475 a.a.
NCBI ID   WP_000980582.1    Uniprot ID   -
Organism   Escherichia coli strain CT265     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3062156..3073583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYL30_RS15115 (MYL30_15035) yeeW 3062340..3062534 (+) 195 WP_000988599.1 DUF5983 family protein -
  MYL30_RS15120 (MYL30_15040) - 3062568..3062660 (+) 93 Protein_2964 DUF957 domain-containing protein -
  MYL30_RS15125 - 3062949..3063086 (-) 138 Protein_2965 transposase domain-containing protein -
  MYL30_RS15130 - 3063149..3063331 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  MYL30_RS15135 (MYL30_15055) tmaR 3063432..3063761 (-) 330 WP_000450409.1 DUF496 family protein -
  MYL30_RS15140 (MYL30_15060) yeeA 3063933..3064991 (-) 1059 WP_001200905.1 FUSC family protein -
  MYL30_RS15145 (MYL30_15065) sbmC 3065189..3065662 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  MYL30_RS15150 (MYL30_15070) dacD 3065781..3066947 (-) 1167 WP_000830150.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  MYL30_RS15155 (MYL30_15075) sbcB 3067156..3068583 (+) 1428 WP_000980582.1 exodeoxyribonuclease I Machinery gene
  MYL30_RS15160 (MYL30_15080) tsuB 3068626..3068853 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  MYL30_RS15165 (MYL30_15085) tsuA 3068867..3069871 (-) 1005 WP_001349968.1 thiosulfate utilization transporter TsuA/YeeE -
  MYL30_RS15170 (MYL30_15090) - 3069978..3071186 (+) 1209 WP_001352368.1 IS4-like element ISVsa5 family transposase -
  MYL30_RS15175 - 3071201..3071263 (-) 63 Protein_2975 hypothetical protein -
  MYL30_RS15180 (MYL30_15095) plaP 3071442..3072800 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  MYL30_RS15185 (MYL30_15100) yoeI 3072790..3072852 (-) 63 WP_010723108.1 membrane protein YoeI -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6086

>NTDB_id=584552 MYL30_RS15155 WP_000980582.1 3067156..3068583(+) (sbcB) [Escherichia coli strain CT265]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=584552 MYL30_RS15155 WP_000980582.1 3067156..3068583(+) (sbcB) [Escherichia coli strain CT265]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCAATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCACTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581