Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccrB   Type   Machinery gene
Locus tag   KU523_RS00165 Genome accession   NZ_CP077870
Coordinates   37316..38944 (-) Length   542 a.a.
NCBI ID   WP_061657937.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 360     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 37316..133862 37316..38944 within 0


Gene organization within MGE regions


Location: 37316..133862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU523_RS00165 (KU523_00165) ccrB 37316..38944 (-) 1629 WP_061657937.1 cassette chromosome recombinase CcrB Machinery gene
  KU523_RS00170 (KU523_00170) ccrA 38965..40314 (-) 1350 WP_061657934.1 cassette chromosome recombinase CcrA Machinery gene
  KU523_RS00175 (KU523_00175) cch1 40502..42271 (-) 1770 WP_000020211.1 cassette chromosome replicative helicase -
  KU523_RS00180 (KU523_00180) ssb 42271..42567 (-) 297 WP_000220590.1 cassette chromosome ssDNA-binding protein -
  KU523_RS00185 (KU523_00185) - 42740..44254 (-) 1515 WP_061657932.1 hypothetical protein -
  KU523_RS00190 (KU523_00190) - 44394..45098 (+) 705 WP_016170663.1 FRG domain-containing protein -
  KU523_RS00195 (KU523_00195) tirS 45122..45964 (+) 843 WP_000114516.1 NAD(+) hydrolase TirS -
  KU523_RS00200 (KU523_00200) - 46408..46716 (+) 309 WP_010956616.1 hypothetical protein -
  KU523_RS00205 (KU523_00205) - 46810..46959 (-) 150 WP_154391900.1 hypothetical protein -
  KU523_RS00210 (KU523_00210) - 47302..47940 (+) 639 WP_001033157.1 fusidic acid resistance EF-G-binding protein FusC -
  KU523_RS00215 (KU523_00215) - 48626..49255 (+) 630 WP_001053440.1 hypothetical protein -
  KU523_RS00220 (KU523_00225) - 49934..50362 (-) 429 WP_225806115.1 VOC family protein -
  KU523_RS00225 (KU523_00230) - 50442..51371 (+) 930 WP_049426240.1 helix-turn-helix transcriptional regulator -
  KU523_RS00230 (KU523_00235) - 51691..51825 (-) 135 WP_001790628.1 hypothetical protein -
  KU523_RS00235 (KU523_00240) - 51789..51881 (+) 93 WP_001790000.1 hypothetical protein -
  KU523_RS00240 (KU523_00245) - 52028..53775 (+) 1748 Protein_47 DUF6119 family protein -
  KU523_RS00245 (KU523_00250) - 53869..54327 (-) 459 Protein_48 tRNA-dihydrouridine synthase -
  KU523_RS00250 (KU523_00255) - 54337..54438 (-) 102 WP_001791873.1 hypothetical protein -
  KU523_RS00255 (KU523_00260) - 54536..55291 (-) 756 WP_000355845.1 sulfite exporter TauE/SafE family protein -
  KU523_RS00260 (KU523_00265) cstR 55291..55551 (-) 261 WP_001105087.1 persulfide-sensing transcriptional repressor CstR -
  KU523_RS00265 (KU523_00270) cstA 55688..56755 (+) 1068 WP_050956465.1 persulfide response sulfurtransferase CstA -
  KU523_RS00270 (KU523_00275) cstB 56786..58120 (+) 1335 WP_000465474.1 persulfide dioxygenase-sulfurtransferase CstB -
  KU523_RS00275 (KU523_00280) - 58139..59117 (+) 979 Protein_54 FAD-dependent oxidoreductase -
  KU523_RS14680 - 59384..59598 (-) 215 Protein_55 universal stress protein -
  KU523_RS00280 (KU523_00285) - 59784..60770 (-) 987 WP_000662031.1 tRNA dihydrouridine synthase -
  KU523_RS00285 (KU523_00290) - 61079..61282 (+) 204 WP_000398679.1 DUF6007 family protein -
  KU523_RS00290 (KU523_00295) - 61331..61627 (+) 297 WP_000201640.1 TfoX/Sxy family protein -
  KU523_RS00295 (KU523_00300) - 61699..62919 (-) 1221 WP_000130764.1 MFS transporter -
  KU523_RS00300 (KU523_00305) - 62912..63463 (-) 552 WP_000627024.1 flavodoxin family protein -
  KU523_RS00305 (KU523_00310) - 63576..64436 (+) 861 WP_001052510.1 LysR family transcriptional regulator -
  KU523_RS00310 (KU523_00315) - 64791..65324 (-) 534 WP_000543163.1 DUF4865 family protein -
  KU523_RS00315 (KU523_00320) - 65415..66158 (+) 744 WP_001793250.1 LysR family transcriptional regulator -
  KU523_RS00320 (KU523_00325) - 66592..67194 (+) 603 WP_000908952.1 hypothetical protein -
  KU523_RS00325 (KU523_00330) - 67461..70613 (+) 3153 WP_000080559.1 DEAD/DEAH box helicase -
  KU523_RS00330 (KU523_00335) - 70670..71152 (+) 483 WP_000410568.1 hypothetical protein -
  KU523_RS00335 (KU523_00340) - 71357..72343 (+) 987 WP_000710576.1 phosphatidylinositol-specific phospholipase C -
  KU523_RS00340 (KU523_00345) - 72564..73334 (+) 771 WP_000977774.1 tandem-type lipoprotein -
  KU523_RS00345 (KU523_00350) - 73386..74157 (+) 772 Protein_69 tandem-type lipoprotein -
  KU523_RS00350 (KU523_00355) - 74221..74991 (+) 771 WP_225806116.1 tandem-type lipoprotein -
  KU523_RS00355 (KU523_00360) - 75055..75825 (+) 771 WP_031857449.1 tandem-type lipoprotein -
  KU523_RS00360 (KU523_00365) aryK 75919..78156 (+) 2238 WP_001188495.1 transcriptional regulator AryK -
  KU523_RS00365 (KU523_00370) - 78307..79485 (+) 1179 WP_001075826.1 M20 family metallopeptidase -
  KU523_RS00370 (KU523_00375) norC 79487..80875 (+) 1389 WP_001006444.1 multidrug efflux MFS transporter NorC -
  KU523_RS00375 (KU523_00380) - 81368..83029 (-) 1662 WP_001791835.1 Na/Pi cotransporter family protein -
  KU523_RS00380 (KU523_00385) - 83355..85130 (-) 1776 WP_225806117.1 oleate hydratase -
  KU523_RS00385 (KU523_00390) - 85304..86176 (-) 873 WP_050956464.1 DMT family transporter -
  KU523_RS00390 (KU523_00395) - 86289..87686 (+) 1398 WP_001151814.1 PLP-dependent aminotransferase family protein -
  KU523_RS00395 (KU523_00400) - 87876..88349 (+) 474 WP_000036327.1 DUF1648 domain-containing protein -
  KU523_RS00400 (KU523_00405) - 88611..90203 (+) 1593 WP_000173902.1 L-lactate permease -
  KU523_RS00405 (KU523_00410) spa 90532..92058 (-) 1527 WP_000728763.1 staphylococcal protein A -
  KU523_RS00410 (KU523_00415) sarS 92479..93231 (-) 753 WP_000876756.1 HTH-type transcriptional regulator SarS -
  KU523_RS00415 (KU523_00420) sirC 93600..94598 (-) 999 WP_000136636.1 staphyloferrin B ABC transporter permease subunit SirC -
  KU523_RS00420 (KU523_00425) sirB 94595..95590 (-) 996 WP_000924997.1 staphyloferrin B ABC transporter permease subunit SirB -
  KU523_RS00425 (KU523_00430) sirA 95606..96598 (-) 993 WP_001045111.1 staphyloferrin B ABC transporter substrate-binding protein SirA -
  KU523_RS00430 (KU523_00435) sbnA 96829..97809 (+) 981 WP_000570808.1 2,3-diaminopropionate biosynthesis protein SbnA -
  KU523_RS00435 (KU523_00440) sbnB 97806..98816 (+) 1011 WP_001078456.1 N-[(2S)-2-amino-2-carboxyethyl]-L-glutamate dehydrogenase SbnB -
  KU523_RS00440 (KU523_00445) sbnC 98837..100591 (+) 1755 WP_001179384.1 staphyloferrin B biosynthesis protein SbnC -
  KU523_RS00445 (KU523_00450) sbnD 100584..101840 (+) 1257 WP_000610051.1 staphyloferrin B export MFS transporter -
  KU523_RS00450 (KU523_00455) sbnE 101830..103566 (+) 1737 WP_001179888.1 L-2,3-diaminopropanoate--citrate ligase SbnE -
  KU523_RS00455 (KU523_00460) sbnF 103475..105325 (+) 1851 WP_001795559.1 3-(L-alanin-3-ylcarbamoyl)-2-[(2- aminoethylcarbamoyl)methyl]-2-hydroxypropanoate synthase SbnF -
  KU523_RS00460 (KU523_00465) sbnG 105300..106076 (+) 777 WP_225806118.1 staphyloferrin B biosynthesis citrate synthase SbnG -
  KU523_RS00465 (KU523_00470) sbnH 106076..107278 (+) 1203 WP_001223700.1 staphyloferrin B biosynthesis decarboxylase SbnH -
  KU523_RS00470 (KU523_00475) sbnI 107282..108046 (+) 765 WP_001015549.1 bifunctional transcriptional regulator/O-phospho-L-serine synthase SbnI -
  KU523_RS00475 (KU523_00480) - 108242..108649 (+) 408 WP_000094899.1 hypothetical protein -
  KU523_RS00480 (KU523_00485) - 108699..109325 (+) 627 WP_000414628.1 MFS transporter -
  KU523_RS00485 (KU523_00490) - 109537..110313 (+) 777 WP_225806119.1 (S)-acetoin forming diacetyl reductase -
  KU523_RS00490 (KU523_00495) - 110457..110579 (+) 123 WP_001789407.1 hypothetical protein -
  KU523_RS00495 (KU523_00500) - 110649..111629 (+) 981 WP_001789408.1 NAD-dependent epimerase/dehydratase family protein -
  KU523_RS00500 (KU523_00505) - 111592..112284 (+) 693 WP_225806120.1 sugar transferase -
  KU523_RS00505 (KU523_00510) - 112494..113660 (+) 1167 WP_000692514.1 glycosyltransferase family 4 protein -
  KU523_RS00510 (KU523_00515) - 113641..114879 (+) 1239 WP_000431234.1 O-antigen ligase family protein -
  KU523_RS00515 (KU523_00520) - 114869..116299 (+) 1431 WP_000834084.1 oligosaccharide flippase family protein -
  KU523_RS00520 (KU523_00525) - 116567..117166 (+) 600 WP_000874681.1 superoxide dismutase -
  KU523_RS00525 (KU523_00530) - 117534..118135 (+) 602 Protein_105 hypothetical protein -
  KU523_RS00530 - 118122..118259 (+) 138 WP_223181133.1 LPXTG cell wall anchor domain-containing protein -
  KU523_RS00535 (KU523_00535) - 118451..119206 (-) 756 WP_001789411.1 GntR family transcriptional regulator -
  KU523_RS00540 (KU523_00540) deoD 119442..120149 (+) 708 WP_000843292.1 purine-nucleoside phosphorylase -
  KU523_RS00545 (KU523_00545) tet(38) 120156..121508 (+) 1353 WP_001100300.1 tetracycline efflux MFS transporter Tet(38) -
  KU523_RS00550 (KU523_00550) deoC 121589..122251 (+) 663 WP_000667269.1 deoxyribose-phosphate aldolase -
  KU523_RS00555 (KU523_00555) deoB 122279..123457 (+) 1179 WP_000197806.1 phosphopentomutase -
  KU523_RS00560 (KU523_00560) phnE 123588..124403 (-) 816 WP_225806121.1 phosphonate ABC transporter, permease protein PhnE -
  KU523_RS00565 (KU523_00565) phnE 124400..125200 (-) 801 WP_001127689.1 phosphonate ABC transporter, permease protein PhnE -
  KU523_RS00570 (KU523_00570) phnC 125202..125975 (-) 774 WP_000078092.1 phosphonate ABC transporter ATP-binding protein -
  KU523_RS00575 (KU523_00575) - 126189..127145 (-) 957 WP_000787672.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  KU523_RS00580 (KU523_00580) - 127374..128918 (+) 1545 WP_000725596.1 hypothetical protein -
  KU523_RS00585 (KU523_00585) - 128969..130504 (+) 1536 WP_000065035.1 bifunctional metallophosphatase/5'-nucleotidase -
  KU523_RS00590 (KU523_00590) - 130579..130791 (+) 213 Protein_118 zinc peptidase -
  KU523_RS00595 (KU523_00595) - 131035..131924 (+) 890 Protein_119 replication initiation protein -
  KU523_RS00600 (KU523_00600) - 132008..132310 (+) 303 WP_078148090.1 hypothetical protein -

Sequence


Protein


Download         Length: 542 a.a.        Molecular weight: 62589.53 Da        Isoelectric Point: 9.7287

>NTDB_id=584342 KU523_RS00165 WP_061657937.1 37316..38944(-) (ccrB) [Staphylococcus aureus strain 360]
MQQLKQKRVAIYVRVSTEIQSTEGYSITGQINQIEEYCQFNNFKVVDVYADRGISGKSMNRPELQRMLKDANEGHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANTLNHKGYVTKKGKPFSISSITYILSNPFYMGKIQFAK
YKDWNEKRRKGLNDKPIIAEGKHAPIISQALWDKVQARKKQVSQKPQVHGKGTNLLTGIVHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVIERVNQDNQVDVAALNHDIAYKQQQFD
EINTKLKNLVQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKHQQNQEKPSYDTKQIAALLQRIFQNIEFMDKSQLK
ALYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=584342 KU523_RS00165 WP_061657937.1 37316..38944(-) (ccrB) [Staphylococcus aureus strain 360]
ATGCAACAACTCAAACAAAAACGTGTCGCTATCTATGTTCGTGTATCAACGGAAATCCAAAGTACTGAAGGCTACTCGAT
AACAGGCCAGATCAATCAGATTGAAGAATACTGTCAATTTAATAACTTCAAAGTGGTAGATGTGTACGCAGATCGTGGTA
TTTCCGGAAAATCTATGAACCGTCCTGAGCTCCAACGTATGTTGAAGGATGCGAATGAAGGTCATATCGATTGTGTCATG
GTGTACAAAACAAACCGACTGGCACGTAATACATCAGACTTACTCAAAATTGTCGAAGATTTGCATAAGCAAAATGTCGA
ATTTTTCAGTTTGTCTGAACGTATGGAAGTCAATACTTCTTCTGGAAAACTCATGTTACAAATACTTGCGAGTTTCTCAG
AATTTGAACGTAATAACATTGTCGAGAACGTATTCATGGGCCAAACCAGACGTGCCCAAGAAGGCTATTATCAAGGAAAT
TTACCGCTAGGCTATGACAAAATACCCGACAGTAAACACGAATTGATGATTAATCAACATGAAGCTAATATTGTAAAATA
TATTTTCGAATCTTATGCCAAAGGGCATGGCTATCGTAAAATTGCCAATACACTCAATCATAAAGGCTATGTCACTAAAA
AAGGGAAGCCTTTCAGTATAAGTTCTATTACTTATATTCTATCCAATCCCTTCTATATGGGTAAAATTCAATTTGCGAAG
TACAAAGATTGGAATGAAAAACGTCGTAAAGGACTGAATGATAAACCGATCATAGCTGAGGGTAAGCACGCCCCTATTAT
TAGCCAAGCATTATGGGATAAAGTGCAAGCACGTAAAAAGCAAGTCAGTCAAAAACCCCAAGTTCACGGTAAAGGAACTA
ATCTATTAACCGGTATCGTTCATTGTCCCCAATGCGGAGCACCTATGGCCGCGAGTAATACTACTAATACACTCAAAGAT
GGAACAAAGAAACGTATTCGCTATTATTCTTGTAGTAACTTTCGCAACAAAGGATCAAAGGTATGTTCAGCCAATAGTGT
TAGAGCTGATGTGATTGAGAAATACGTCATGGATCAAATACTTGAAATTGTCAAAAGCGATAAAGTTCTCAAACAAGTTA
TCGAACGTGTTAATCAAGATAATCAAGTCGATGTAGCTGCACTCAATCATGATATTGCTTATAAACAACAACAATTTGAT
GAAATTAACACTAAACTTAAAAATCTAGTTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTCAATGACATTACAAATCAAATGAATCAGCTCAAGCACCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATTCATGGATAAATCACAGCTCAAA
GCTTTGTACCTAACGGTTATTGACCGTATTGATATTCGTAAAGACGAGAATCATAAAAAACAATTCTATGTCACTCTCAA
GCTCAATAATGAAATTATTAAACAACTTTTTAATAATAACAATCTAGACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTCAAACACTCTACTTTCAAATATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

85.978

100

0.86