Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   B1NLA3E_RS23020 Genome accession   NC_021171
Coordinates   4796323..4796844 (-) Length   173 a.a.
NCBI ID   WP_015596216.1    Uniprot ID   N0B1V2
Organism   Bacillus sp. 1NLA3E     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4791323..4801844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1NLA3E_RS23000 (B1NLA3E_22175) rplI 4792482..4792931 (-) 450 WP_015596212.1 50S ribosomal protein L9 -
  B1NLA3E_RS23005 (B1NLA3E_22180) - 4792928..4794901 (-) 1974 WP_015596213.1 DHH family phosphoesterase -
  B1NLA3E_RS23010 (B1NLA3E_22185) - 4794970..4795914 (-) 945 WP_015596214.1 YybS family protein -
  B1NLA3E_RS23015 (B1NLA3E_22190) rpsR 4796050..4796289 (-) 240 WP_015596215.1 30S ribosomal protein S18 -
  B1NLA3E_RS23020 (B1NLA3E_22195) ssbA 4796323..4796844 (-) 522 WP_015596216.1 single-stranded DNA-binding protein Machinery gene
  B1NLA3E_RS23025 (B1NLA3E_22200) rpsF 4796927..4797217 (-) 291 WP_015596217.1 30S ribosomal protein S6 -
  B1NLA3E_RS23030 (B1NLA3E_22205) ychF 4797632..4798732 (-) 1101 WP_015596218.1 redox-regulated ATPase YchF -
  B1NLA3E_RS23035 (B1NLA3E_22210) - 4798947..4799144 (-) 198 WP_015596219.1 DUF951 domain-containing protein -
  B1NLA3E_RS23040 (B1NLA3E_22215) - 4799149..4800030 (-) 882 WP_083935210.1 mechanosensitive ion channel family protein -
  B1NLA3E_RS23045 (B1NLA3E_22220) yyaC 4800232..4800849 (+) 618 WP_015596221.1 spore protease YyaC -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19183.89 Da        Isoelectric Point: 5.0106

>NTDB_id=58424 B1NLA3E_RS23020 WP_015596216.1 4796323..4796844(-) (ssbA) [Bacillus sp. 1NLA3E]
MMNRVVLVGRLTKDPDLRYTPNGVAVATFTLAVNRSFSNQQGEREADFINCVVWRRPAENVANFLKKGSLAGVDGHIQTR
HYEGQDGKRVYVTEVVAESVQFLEPKSSASGDRGGSGTYNEPREQQGSPFGNSNNNQNQNQRQNNNNKGYTRVDEDPFAG
DGQIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=58424 B1NLA3E_RS23020 WP_015596216.1 4796323..4796844(-) (ssbA) [Bacillus sp. 1NLA3E]
ATGATGAATCGTGTAGTTCTTGTCGGACGTTTAACAAAAGACCCGGATTTGCGTTATACACCTAATGGAGTAGCAGTTGC
TACATTTACCCTTGCAGTGAATCGTTCTTTTTCAAATCAACAAGGAGAACGGGAAGCGGATTTTATTAACTGTGTGGTCT
GGAGACGGCCAGCAGAAAATGTCGCTAATTTCTTGAAAAAGGGTAGCCTTGCTGGTGTAGACGGGCATATTCAAACACGC
CACTATGAGGGTCAGGACGGCAAGCGCGTTTATGTGACAGAAGTAGTAGCAGAAAGTGTTCAATTTCTTGAACCAAAAAG
CAGTGCATCTGGTGACAGAGGCGGAAGCGGTACTTATAACGAGCCACGGGAACAACAAGGTTCTCCGTTTGGTAACAGTA
ATAATAATCAGAATCAGAATCAACGTCAAAATAATAACAATAAGGGCTATACTCGTGTGGATGAAGATCCTTTCGCTGGT
GATGGACAAATTGACATCTCCGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N0B1V2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.12

100

0.699
  ssb Latilactobacillus sakei subsp. sakei 23K

55.367

100

0.566
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

35.393

100

0.364

Multiple sequence alignment