Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   MX663_RS19745 Genome accession   NZ_CP095736
Coordinates   3772253..3773386 (-) Length   377 a.a.
NCBI ID   WP_101172246.1    Uniprot ID   -
Organism   Bacillus subtilis strain N4     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3767253..3778386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MX663_RS19705 (MX663_19705) ywnA 3767394..3767795 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  MX663_RS19710 (MX663_19710) ureC 3767930..3769639 (-) 1710 WP_003243090.1 urease subunit alpha -
  MX663_RS19715 (MX663_19715) ureB 3769636..3770010 (-) 375 WP_015251023.1 urease subunit beta -
  MX663_RS19720 (MX663_19720) ureA 3770007..3770324 (-) 318 WP_003227724.1 urease subunit gamma -
  MX663_RS19725 (MX663_19725) - 3770505..3770669 (-) 165 WP_015649919.1 hypothetical protein -
  MX663_RS19730 (MX663_19730) - 3770873..3771136 (-) 264 WP_247470897.1 ABC transporter -
  MX663_RS19735 (MX663_19735) csbD 3771357..3771545 (-) 189 WP_015251021.1 stress response protein CsbD -
  MX663_RS19740 (MX663_19740) - 3771618..3772097 (-) 480 WP_003244390.1 hypothetical protein -
  MX663_RS19745 (MX663_19745) rapC 3772253..3773386 (-) 1134 WP_101172246.1 response regulator aspartate phosphatase RapB Regulator
  MX663_RS19750 (MX663_19750) moaA 3773578..3774603 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  MX663_RS19755 (MX663_19755) fdhD 3774619..3775407 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  MX663_RS19760 (MX663_19760) - 3775640..3775801 (-) 162 WP_003227706.1 hypothetical protein -
  MX663_RS19765 (MX663_19765) ywmD 3775896..3776570 (-) 675 WP_247470900.1 VWA domain-containing protein -
  MX663_RS19770 (MX663_19770) - 3776623..3776763 (-) 141 WP_003227702.1 hypothetical protein -
  MX663_RS19775 (MX663_19775) ywmC 3776894..3777577 (-) 684 WP_024571497.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45055.25 Da        Isoelectric Point: 4.8539

>NTDB_id=584192 MX663_RS19745 WP_101172246.1 3772253..3773386(-) (rapC) [Bacillus subtilis strain N4]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESKLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSQAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=584192 MX663_RS19745 WP_101172246.1 3772253..3773386(-) (rapC) [Bacillus subtilis strain N4]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTAAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCTTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAAGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCCAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCAGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.368

100

0.427
  rapF Bacillus subtilis subsp. subtilis str. 168

42.4

99.469

0.422