Detailed information NTG0058416

Bioinformatically predicted

Overview

• Name: degU
• Type: Regulator
• Locus tag: B1NLA3E_RS20650
• Genome accession: NC_021171
• Coordinates: 4298168..4298896 (-)
• Length: 242 a.a.
• NCBI ID: WP_015595764.1
• Uniprot ID: N0AYG9
• Organism: Bacillus sp. 1NLA3E
• Function: activation of comK (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	4287390..4300041	4298168..4298896	within	0

Gene organization within MGE regions

Location: 4287390..4300041

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B1NLA3E_RS20600 (B1NLA3E_19845)	-	4287390..4288157 (-)	768	WP_015595754.1	PP2C family serine/threonine-protein phosphatase	-
B1NLA3E_RS20605 (B1NLA3E_19850)	-	4288179..4289483 (-)	1305	WP_015595755.1	DUF6382 domain-containing protein	-
B1NLA3E_RS20610 (B1NLA3E_19855)	-	4289769..4290071 (-)	303	WP_015595756.1	pore-forming ESAT-6 family protein	-
B1NLA3E_RS20615 (B1NLA3E_19860)	-	4290107..4290403 (-)	297	WP_015595757.1	WXG100 family type VII secretion target	-
B1NLA3E_RS20620 (B1NLA3E_19865)	-	4290480..4290671 (-)	192	WP_015595758.1	DUF1732 domain-containing protein	-
B1NLA3E_RS20625 (B1NLA3E_19870)	-	4290717..4291736 (-)	1020	WP_187292119.1	Mbeg1-like protein	-
B1NLA3E_RS20630 (B1NLA3E_19875)	-	4291748..4292122 (-)	375	WP_015595760.1	hypothetical protein	-
B1NLA3E_RS20635 (B1NLA3E_19880)	-	4292127..4292837 (-)	711	WP_144061519.1	hypothetical protein	-
B1NLA3E_RS20640 (B1NLA3E_19885)	-	4292969..4293220 (-)	252	WP_015595762.1	EsaB/YukD family protein	-
B1NLA3E_RS20645 (B1NLA3E_19890)	essC	4293213..4297832 (-)	4620	WP_015595763.1	type VII secretion protein EssC	-
B1NLA3E_RS20650 (B1NLA3E_19895)	degU	4298168..4298896 (-)	729	WP_015595764.1	response regulator transcription factor	Regulator
B1NLA3E_RS20655 (B1NLA3E_19900)	-	4299406..4300041 (+)	636	WP_015595765.1	YigZ family protein	-

Sequence

Protein

• Length: 242 a.a.
• Molecular weight: 27071.07 Da
• Isoelectric Point: 5.6578

>NTDB_id=58416 B1NLA3E_RS20650 WP_015595764.1 4298168..4298896(-) (degU) [Bacillus sp. 1NLA3E]
MATNIVIIDDQQLFREGVKRILEIENTFKVVAEGQDGQEAVDLFDTYHPDVVLMDINMPMTSGIDATSQLIEKYPEARVI
ILSIHDDENYVMRALQTGARGYLLKEMDAEMLVEAVKVVANGGSYLHPKVTHNLVNEYRRLVAVGLETVGSYGESRQSAA
RTVSGMTTLIEVRRPFHLLTKRECEVLQLLTDGKSNRGIGEALFISEKTVKNHVSNILQKMSVNDRTQAVVVAIKNGWVE
VR

Nucleotide

• Length: 729 bp

>NTDB_id=58416 B1NLA3E_RS20650 WP_015595764.1 4298168..4298896(-) (degU) [Bacillus sp. 1NLA3E]
ATGGCGACGAATATTGTTATTATTGACGACCAGCAATTGTTTAGAGAAGGGGTAAAGCGTATTTTGGAGATTGAAAATAC
GTTTAAGGTTGTGGCTGAGGGACAGGATGGACAAGAGGCCGTGGATTTATTTGATACATATCATCCGGATGTTGTGTTAA
TGGATATTAATATGCCGATGACGAGTGGTATTGATGCGACGAGTCAGTTAATTGAGAAGTACCCTGAGGCTAGGGTGATT
ATTTTATCGATCCATGATGATGAGAATTATGTGATGCGCGCTCTACAAACGGGTGCTCGTGGATATTTGTTAAAAGAGAT
GGATGCGGAAATGCTGGTAGAGGCTGTAAAGGTTGTGGCTAATGGCGGCAGTTATCTGCATCCGAAGGTGACCCATAATT
TGGTGAATGAGTACCGTCGTTTGGTTGCGGTTGGATTGGAAACTGTCGGATCTTATGGTGAAAGTCGCCAGTCTGCAGCT
AGAACCGTAAGTGGTATGACGACTTTAATAGAGGTGCGCCGTCCGTTTCATTTATTAACGAAACGGGAATGTGAGGTACT
GCAGCTGCTAACTGATGGAAAAAGTAATCGCGGTATCGGCGAGGCGTTGTTTATTAGTGAGAAGACGGTAAAAAACCACG
TCAGCAATATTTTACAAAAAATGAGCGTGAATGACCGGACGCAAGCGGTTGTTGTGGCGATAAAAAATGGTTGGGTTGAG
GTAAGGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, luxR family (GerE) (178-233)

• Response regulator receiver domain (Response_reg) (5-117)

3D structure

• AlphaFold DB: N0AYG9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degU	Bacillus subtilis subsp. subtilis str. 168	71.13	98.76	0.702