Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   MX663_RS02540 Genome accession   NZ_CP095736
Coordinates   489555..489989 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain N4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 484555..494989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MX663_RS02510 (MX663_02510) ydaD 485203..486063 (+) 861 WP_247471240.1 SDR family oxidoreductase -
  MX663_RS02515 (MX663_02515) lyxE 486079..486582 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  MX663_RS02520 (MX663_02520) ydaF 486669..487220 (+) 552 WP_088325317.1 GNAT family protein -
  MX663_RS02525 (MX663_02525) ydaG 487298..487720 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  MX663_RS02530 (MX663_02530) amj 488226..489035 (+) 810 WP_061891247.1 lipid II flippase Amj -
  MX663_RS02535 (MX663_02535) ydzA 489080..489370 (-) 291 WP_014475846.1 DUF3817 domain-containing protein -
  MX663_RS02540 (MX663_02540) lrpC 489555..489989 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  MX663_RS02545 (MX663_02545) topB 490054..492237 (+) 2184 WP_247471243.1 DNA topoisomerase III -
  MX663_RS02550 (MX663_02550) - 492440..493528 (+) 1089 WP_247471245.1 lipoprotein YdaJ -
  MX663_RS02555 (MX663_02555) epsK 493509..494360 (+) 852 WP_129110446.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=584075 MX663_RS02540 WP_003246585.1 489555..489989(+) (lrpC) [Bacillus subtilis strain N4]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=584075 MX663_RS02540 WP_003246585.1 489555..489989(+) (lrpC) [Bacillus subtilis strain N4]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1