Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   B1NLA3E_RS17055 Genome accession   NC_021171
Coordinates   3554081..3556501 (-) Length   806 a.a.
NCBI ID   WP_015595080.1    Uniprot ID   N0B383
Organism   Bacillus sp. 1NLA3E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3549081..3561501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1NLA3E_RS17030 (B1NLA3E_16415) - 3549492..3550211 (+) 720 WP_015595079.1 N-acetylmuramoyl-L-alanine amidase -
  B1NLA3E_RS17035 (B1NLA3E_16420) - 3550568..3552028 (+) 1461 WP_015592366.1 IS1182 family transposase -
  B1NLA3E_RS17040 (B1NLA3E_16425) - 3552486..3552809 (+) 324 WP_015592686.1 transposase -
  B1NLA3E_RS17045 (B1NLA3E_16430) - 3552806..3553687 (+) 882 WP_015592685.1 IS3 family transposase -
  B1NLA3E_RS17055 (B1NLA3E_16435) recD2 3554081..3556501 (-) 2421 WP_015595080.1 ATP-dependent RecD-like DNA helicase Machinery gene
  B1NLA3E_RS17060 (B1NLA3E_16440) - 3556530..3557192 (-) 663 WP_015595081.1 tetratricopeptide repeat protein -
  B1NLA3E_RS17065 (B1NLA3E_16445) mnmA 3557285..3558400 (-) 1116 WP_015595082.1 tRNA 2-thiouridine(34) synthase MnmA -
  B1NLA3E_RS17070 (B1NLA3E_16450) - 3558437..3559582 (-) 1146 WP_015595083.1 cysteine desulfurase family protein -
  B1NLA3E_RS17075 (B1NLA3E_16455) - 3559632..3560051 (-) 420 WP_015595084.1 Rrf2 family transcriptional regulator -
  B1NLA3E_RS17080 (B1NLA3E_16460) - 3560078..3560737 (-) 660 WP_015595085.1 YitT family protein -

Sequence

Protein


Download         Length: 806 a.a.        Molecular weight: 91315.52 Da        Isoelectric Point: 5.1287

>NTDB_id=58404 B1NLA3E_RS17055 WP_015595080.1 3554081..3556501(-) (recD2) [Bacillus sp. 1NLA3E]
MEQQNSLDLFSNQGKFIKGKHLVTIFHNEQNLYTVMRIRVEETNETYEDKEAVITGYFPRVHEQESYIFYGEMKEHPRFG
LQFHATHFRKDMPQSKQGVINYLSSELFKGIGKKTAEKVVETLGENTISKILNEPSLLDSIPKLPPERAKLLYDTLMEHQ
GLEQIMVALNQYGFGPQISMRIYQVYKEETLEKIQKNPYQLVEDIEGIGFGRADELGHQLGITGSHPDRIKAGCHYTLEN
QSIQAGHVYVEASSLLDRVKTLLEENQRDIIEFADISAEVIKLAEEGKIIIEDQRVYLPSLYFAEKGIVKHMKRIMAQTE
YANQFPESEFLLALGQLEERISVQYAPTQKEAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGCSLDTKDYKKEE
PFPFLLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGTEGFDHHEDNPLEGKILIIDETSMVDVWMANQLFKALSETIQVI
LVGDEDQLPSVGPGQVLKDMLRSGVIPLVRLTDIYRQAEGSSIIELAHEIKRGRVPQQISIQQKDRSFIRCSTGQMADVV
EKVVLNAKKKGFTARDIQVLAPMYRGVAGVDRLNVLLQEIFNPNPDGTRKELLFADIKYRIGDKVLQLVNQPENNVFNGD
IGEVVSIFFAKENVEKQDMLIVSFEGTEVTYTRQDLNKLTHAYCCTVHKAQGSEFPIVILPVVKSYYRMLRRNLIYTAIT
RSKQFLILCGEEEALRIGVERADDQARNTTLTEKLQEALQFNSHEAKEQIPVPNETLDGQEISYEAMLMEVDPLIGMDEA
TPYDFM

Nucleotide


Download         Length: 2421 bp        

>NTDB_id=58404 B1NLA3E_RS17055 WP_015595080.1 3554081..3556501(-) (recD2) [Bacillus sp. 1NLA3E]
GTGGAACAACAAAACTCGCTCGATTTGTTTTCGAATCAAGGGAAATTTATCAAGGGTAAACATCTTGTTACGATTTTTCA
TAATGAACAAAATTTATATACTGTAATGAGAATTCGCGTTGAGGAAACAAACGAGACGTATGAGGATAAGGAAGCTGTGA
TTACCGGGTATTTCCCCCGGGTCCATGAACAAGAATCATATATTTTCTATGGCGAAATGAAAGAACACCCTCGATTTGGT
CTCCAATTTCATGCTACCCACTTTCGAAAAGACATGCCTCAATCTAAACAGGGTGTTATAAATTATTTGTCCAGTGAACT
ATTTAAAGGGATTGGAAAGAAGACAGCGGAAAAGGTTGTTGAAACCCTAGGGGAAAACACGATTTCTAAAATTTTGAATG
AACCGTCTCTGCTTGATTCTATTCCAAAGTTGCCTCCGGAGCGAGCTAAGCTTCTTTATGACACACTCATGGAACATCAG
GGTCTTGAGCAAATCATGGTCGCATTAAATCAGTATGGGTTTGGGCCACAAATCTCAATGAGAATCTATCAGGTCTATAA
AGAAGAGACACTAGAAAAGATCCAAAAAAATCCCTATCAGCTTGTAGAAGATATCGAAGGAATCGGTTTCGGTAGAGCAG
ATGAGTTAGGGCACCAACTCGGTATTACAGGATCTCATCCTGACCGTATCAAGGCTGGGTGCCATTATACACTTGAAAAT
CAAAGCATTCAGGCGGGCCATGTATATGTCGAAGCTTCTAGTTTATTAGATCGAGTCAAAACACTACTTGAAGAAAATCA
ACGAGATATCATAGAGTTTGCAGATATATCCGCAGAAGTAATTAAACTGGCTGAAGAGGGAAAAATCATCATAGAGGACC
AGCGTGTTTATTTACCATCGCTTTATTTCGCGGAAAAGGGAATCGTTAAGCACATGAAACGAATCATGGCTCAAACTGAA
TACGCGAACCAGTTTCCAGAATCGGAATTTTTGCTAGCCTTAGGCCAACTTGAGGAGCGCATCAGCGTTCAATATGCTCC
AACCCAAAAAGAGGCAATTCAAACGGCACTCATGTCACCAATGTTAATTTTGACAGGTGGGCCAGGGACAGGGAAAACAA
CAGTCATAAAAGGAATTGTCGAGCTTTATGCTGAGCTTCATGGTTGTTCCCTGGATACTAAGGACTATAAAAAAGAAGAG
CCTTTTCCATTTTTGCTTGCTGCACCAACTGGGCGTGCCGCCAAACGGATGTCAGAGTCAACAGGACTTCCTGCTGTTAC
GATCCACCGTTTACTTGGATGGAATGGGACAGAGGGCTTTGATCATCATGAGGACAATCCTTTAGAAGGGAAAATCCTTA
TCATCGATGAAACTTCAATGGTTGATGTATGGATGGCCAATCAATTATTTAAGGCGTTATCTGAAACCATTCAAGTGATT
CTCGTTGGTGATGAGGACCAACTACCATCGGTTGGACCCGGGCAGGTTCTTAAGGATATGCTCCGCTCAGGTGTCATCCC
TTTGGTTCGCTTAACCGATATATACAGACAAGCAGAGGGATCATCGATTATTGAACTTGCACATGAAATCAAGCGAGGAC
GGGTTCCGCAACAAATATCAATCCAACAAAAGGATCGCTCGTTTATTAGATGTTCTACAGGTCAAATGGCTGATGTTGTG
GAAAAAGTTGTGCTGAATGCTAAGAAGAAAGGTTTTACCGCGAGGGATATCCAAGTTCTTGCACCAATGTATCGAGGTGT
AGCTGGGGTTGATCGCTTAAATGTTTTGTTGCAGGAAATATTCAATCCAAATCCCGATGGTACGCGCAAAGAGCTTCTGT
TTGCTGATATAAAATATCGGATTGGTGATAAGGTTCTCCAACTTGTAAATCAGCCAGAAAATAATGTATTTAACGGTGAT
ATTGGAGAAGTCGTTTCGATTTTTTTTGCAAAAGAAAATGTTGAAAAACAAGATATGCTGATTGTCTCCTTTGAGGGGAC
AGAGGTAACTTATACGCGTCAAGATTTAAATAAGTTAACGCATGCCTATTGTTGTACTGTTCATAAAGCGCAGGGAAGTG
AGTTCCCGATTGTTATTCTTCCTGTTGTCAAAAGTTATTATCGTATGCTAAGACGGAACTTAATTTATACAGCGATTACG
AGAAGTAAACAATTCCTTATTTTATGCGGCGAGGAAGAGGCTCTTCGTATCGGGGTTGAACGGGCTGATGATCAAGCTAG
AAATACCACTTTAACTGAAAAACTTCAAGAGGCATTGCAATTTAATAGCCATGAAGCCAAGGAGCAAATACCGGTCCCAA
ATGAAACCCTAGATGGACAAGAAATTTCCTACGAGGCTATGTTAATGGAAGTGGATCCGTTAATTGGGATGGACGAAGCT
ACCCCGTATGACTTTATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-552)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N0B383

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.577

99.132

0.61

Multiple sequence alignment