Detailed information NTG0584015

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: MW399_RS10315
• Genome accession: NZ_CP095540
• Coordinates: 2175509..2176501 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain GN03204
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2170509..2181501

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MW399_RS10285 (MW399_10285)	ispD	2170570..2171280 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
MW399_RS10290 (MW399_10290)	ispF	2171280..2171759 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
MW399_RS10295 (MW399_10295)	truD	2171756..2172805 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
MW399_RS10300 (MW399_10300)	surE	2172786..2173547 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
MW399_RS10305 (MW399_10305)	pcm	2173541..2174167 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
MW399_RS10310 (MW399_10310)	nlpD	2174352..2175446 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
MW399_RS10315 (MW399_10315)	rpoS	2175509..2176501 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
MW399_RS10320 (MW399_10320)	-	2176672..2177223 (-)	552	WP_001179444.1	flavodoxin family protein	-
MW399_RS10325 (MW399_10325)	-	2177448..2178491 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
MW399_RS10330 (MW399_10330)	ygbN	2178634..2179998 (-)	1365	WP_000104433.1	GntP family transporter	-
MW399_RS10335 (MW399_10335)	ygbM	2180087..2180863 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=584015 MW399_RS10315 WP_000081550.1 2175509..2176501(+) (rpoS) [Escherichia coli strain GN03204]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=584015 MW399_RS10315 WP_000081550.1 2175509..2176501(+) (rpoS) [Escherichia coli strain GN03204]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715